GgaINT0013026 @ galGal3
Intron Retention
Gene
ENSGALG00000002201 | Q6PVZ7_CHICK
Description
NA
Coordinates
chr14:14030133-14030809:-
Coord C1 exon
chr14:14030663-14030809
Coord A exon
chr14:14030285-14030662
Coord C2 exon
chr14:14030133-14030284
Length
378 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATG
5' ss Score
9.43
3' ss Seq
CTGTTGGTTCCCATCCCCAGGGC
3' ss Score
10.05
Exon sequences
Seq C1 exon
GACCAAGAGAAGGCCCTGGAGAAGTACGATGCCGTGGTGCAGTCGCTGCAGGAGCGCAGCCAGCACATCCTGCCCCTGCGGTACCGCCGGCTGCCACCACCACAGCCCATCCCTGTGGAGGCTCTGTGCGAGTATGAGGGCGAGCAG
Seq A exon
GTAATGGCCCCAGGGTGAATGGAGGGGACAGAGGTGTCACCTGCACCGGGGACAGGGTGAGCGTGATGGGCAAAGCACAGCCTCCAATGGCCCTGCAGCCATGGTGCTTGTTGCACACCCTCCGTGATGCTGTGTCGCAGCGCCACGCTGAGCTGGGGGTAGTAAGGTGACAGCCACACCAAGTGCCACCTGGGTGGGCTGACTCAGCCTCAGCCTCCACCAAGGGACCCACGGCAGGTCCCACCTCCTCCCTGCCCCTCCTCCCTGCCCCTGGTGCACTTACTGCCAGCAGAGAGATGGCTGGGGGCCGTGGGGAGTGACCCCACGAGTGCGAGGGGCACAGCCTGACCTGCTGCTGCTGTTGGTTCCCATCCCCAG
Seq C2 exon
GGCCAGATAACCCGAGGAGCGCACTACACCCTGCAGAAGAACAGTGGAGACATCTGGGAAGTGATGGACGGTGCTGGAGGTGCCATCAGTGCCCCGGGTGTCTGCTTCATGATCCCCCCTCCAGATGCAGAGGCAATAGCACTGGCAGACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002201:ENSGALT00000003446:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.122 A=NA C2=0.078
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAGAGAAGGCCCTGGAGAA
R:
GTCTGCCAGTGCTATTGCCTC
Band lengths:
295-673
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]