RnoINT0116052 @ rn6
Intron Retention
Gene
ENSRNOG00000002930 | Ppl
Description
periplakin [Source:RGD Symbol;Acc:1305511]
Coordinates
chr10:10674929-10676006:+
Coord C1 exon
chr10:10674929-10675075
Coord A exon
chr10:10675076-10675854
Coord C2 exon
chr10:10675855-10676006
Length
779 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
3' ss Seq
GTTGGGTCTGTTCGCACCAGGGC
3' ss Score
5.45
Exon sequences
Seq C1 exon
GACCAGGAGAAGGCTCTGGACAAGTATGAGGATGTGGTGCGGGGGCTGCAGAAGCGAGGGCAGCAAGTGCTGCCACTCAAGTACCGGCGTGAGACGCCACTCAAGCCCATCCCTGTGGAGGCCCTCTGTGACTTTGAGGGTGACCAG
Seq A exon
GTCAGTCACTACCTGGAGCCCTAGTCAGTCTGGACCTGCAGCACAGAAGTCTTAGGGGTGGCACAGGTAGAGCTGGGACCACAAGCAATCATCTCTCGTGGGTGTCACTCTGTCCACCCTTTCTCCTGGGGGGTGGATATGCACCCCATTACCCTTTCCCTTCCCCCGCTGCCCCACCTTCATCTTTCTTACCAGCTCAACCACCCTAGCCATTCTAGCTAGAATCCCAGGGAAGCCTCTCGCCGGCCCATTTTATAATGTTTACAGCCACCTCTAACCAGTTCCTGAGGCTGGGAATGTCAGCTTCTCATTGGCCCGGCCTCAGTCATATGTCCATCCGGAGACTGGATAGAGGAGGTGACCCACTTGAACTAGGCATGGGTGGGGATGGTTCCCTAAGGCGAGGCTGGGGGGCTGGAGATGCACGAGGCCCTGCACTGCACAAACCAGACGTGGATGACGGCACACGCCTGTAAACCCATCACTCTGGGATTAAAAGCAGGAGCATCTGAAGTTCAACGTGTCCTCCACCACAGAGTAAAGTTGAAGCTAGCTAGGGTCATGCGAGACCTTATCACGAAAACAAAAATGAAGCCTAAACAGAGATCGGGGCTGAGCTGGTGGTCAAGAGGGTTCCGTTTGTGCTGACTCTGCCAGGCCTGAGTCAGAGGAAGGCTAAGACTCTCTGTGTCTAAGAGTTAAGAGGGCCGTGGGGCAGACAGAGAGCCTCCGGCTCTCAGGCCTGAGAGAATCTGAAATGTTGGGTCTGTTCGCACCAG
Seq C2 exon
GGCCTAATCTCCCGGGGCTACAGCTACACGCTGCAGAAGAACAACGGGGAGAGCTGGGAGCTGACAGACAGCACTGGGAAGAAGCTGATGGCCCCAGCTGTCTGCTTCATCATTCCCCCCACCGACCCCGAGGCCTTGGCTCTCTCGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002930:ENSRNOT00000004026:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.196
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PD(40.5=65.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGGAGAAGGCTCTGGACAA
R:
CTGTCCGAGAGAGCCAAGGC
Band lengths:
297-1076
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]