HsaINT0130394 @ hg38
Intron Retention
Gene
ENSG00000118898 | PPL
Description
periplakin [Source:HGNC Symbol;Acc:HGNC:9273]
Coordinates
chr16:4894467-4895407:-
Coord C1 exon
chr16:4895261-4895407
Coord A exon
chr16:4894619-4895260
Coord C2 exon
chr16:4894467-4894618
Length
642 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCGT
5' ss Score
9.73
3' ss Seq
GTCCAGCCTGCCCCCGCCAGGGC
3' ss Score
4.29
Exon sequences
Seq C1 exon
GACCAGGAGAAGGTGCTGGACAAGTATGAGGACGTGGTGCAGGGGCTGCAGAAGCGAGGCCAGCAGGTGGTGCCCCTCAAGTACCGCCGGGAGACTCCGCTCAAGCCCATCCCCGTGGAGGCACTCTGTGACTTTGAGGGGGAGCAG
Seq A exon
GTGCGTGGGGCCAGCTCCTCTGTTCACATCACTACAAAGTTTTTGGGGTAACATGGTTGGATCCCGGGCCTCAGGCGCCGTTCTCAGGAGCCTGTGCCTGTCTCCGTGGTTGGTGTCACTCTGCCAACCCTTCCCCTGGTGCAGGCCAACTGGCACCCCTATGCCGCCCCCACCTCGGCTGCCCTGGCCTTGTGTTCCACCAGCTTAGCAACCCCAGTCCCTCCTCAGAAGTCCCAGGCCAGGTTCTCATTGGCTCACTGTGAGTCACGTGTCCATCCTACACCAATCACTGTGGCCAGGGAATGCCAGGGTCCACCCTATACCAATGACTGTGGCTGGCGAATGCCAGTCATTGGCCAGGTCCAAGTCACATGTCCATCTGGAGCTTGGGAATGGAGAAGGAGAGACCACAGGGACTGGGAATTGGGAGGGAAGGTTCCCCAAAGGGAAATGGAGGTGGGTTGCTGGGCCGGCAGCCTCAACACATGTGCTTCTCCTGCATGCCCCTCCCCACTCTACGGGGAGGGTCCAAGTGATGAGCCGGGGCTCCCCAGGTCCAAGAGTCGGGGGCTGAGATGGCAACCGGGCTCCCAGGCCCTCAGGCCCTGCCGGGATCCTGACTGTCCAGCCTGCCCCCGCCAG
Seq C2 exon
GGCCTGATCTCGCGGGGCTACAGCTACACCCTGCAGAAGAACAACGGGGAGAGCTGGGAGCTCATGGACAGCGCTGGGAACAAGCTGATTGCTCCGGCCGTGTGTTTTGTGATCCCCCCCACAGACCCTGAGGCCCTGGCTCTGGCTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000118898:ENST00000345988:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.059
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGAAGGTGCTGGACAAGT
R:
TGTCAGCCAGAGCCAGGG
Band lengths:
294-936
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development