GgaINT0013032 @ galGal3
Intron Retention
Gene
ENSGALG00000002201 | Q6PVZ7_CHICK
Description
NA
Coordinates
chr14:14026566-14027520:-
Coord C1 exon
chr14:14027327-14027520
Coord A exon
chr14:14026717-14027326
Coord C2 exon
chr14:14026566-14026716
Length
610 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TGAGTCCATTTCCCCTACAGAAC
3' ss Score
9.06
Exon sequences
Seq C1 exon
GCCATGGGCTCTGAGCTCCAATCCAAAAGGTTCTTGCTCAATGAGGCGGAGCAGAACTTGCTGAGGACCAAGACCTGCTCCAACACCCTGGCCAGCAAGTTCCAGGAGCACTGCCCTGACATTGAGCGGCAGGAAGCCGAGCTCTACAAGCTCAACCAGCGCTTCAACAACCTCAGCAAGCAAATTGACCACAG
Seq A exon
GTGAGGCCGTAGGACAGCACCTGGCTGGAACTGAACCAGCCTGGGATATTTACAATAGGGCAGGAACCGCTCTGAAAGCAGAAGAGACATAATGCTGTCTAGGAATGGGCAGTTGCAGAATGGCTTCCAGGCAGTGCCAAAGAGGAAGCTTTAGATGTTCCTGACACGTGCTGGCTGGGTAGGTCTGGGCAGCCTCTGGGATTAAGTGTTCTTGCTACAGATGGGGACTTTGGCAAGAGTGACTGCACCTGCAGTAGGTGAGATAAGAGCGTATGAGCTGTCATCCACCCACATCTGCCTCTGCCTGGATCACAGCACGTCTTGTGCCTTCTTGTCCCACTACAGGCTTACACCCAGCATTCAGCATCCTCCATGTTCTCCCTGAGGTTTCCCTGTGACTCATTTCTCCCGCGATTTCCACTTGCTTTCATACCAGCCAGGTGGCACTGATTCCTGCAGAGCAGTACCTGCAGGGAGGGGGACGGAGAACAACTCCAGCTCAACTCCATGCCTTTGGGGAACTGGGGAGGGGAAGCAGGGACCAACAAAGAGGTGTTTGCAGAAGACAACAATTGAGAATGCATTGACATTGAGTCCATTTCCCCTACAG
Seq C2 exon
AACACAGACCCTGCAGAAAGCAAAGAGTGCCTATTCCAACTACCGCACAAACTATGACAAAATCAACCAGTTCCTTTGCAACATACCCAACTACGAGCCGCAGGAGACAGACAACATCCAGCAGGTGGAAGTGAAGCTGAAGAACCAAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002201:ENSGALT00000003446:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.031 A=NA C2=0.235
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGGGCTCTGAGCTCCAATC
R:
CGCTTGGTTCTTCAGCTTCAC
Band lengths:
343-953
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]