MmuINT0124869 @ mm9
Intron Retention
Gene
ENSMUSG00000039457 | Ppl
Description
periplakin [Source:MGI Symbol;Acc:MGI:1194898]
Coordinates
chr16:5094502-5096912:-
Coord C1 exon
chr16:5096719-5096912
Coord A exon
chr16:5094653-5096718
Coord C2 exon
chr16:5094502-5094652
Length
2066 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
TGACTGGTTGGTCCCCACAGGGC
3' ss Score
8.68
Exon sequences
Seq C1 exon
GCCATGGCTTCTGAGCTGCAGGCCCACAAGTCCCTCCTGGGTGAGGTGGAACAGAACCTACAGGTGGCCAAGCAGTGTTCCAGCTCACTGGCCAGCCGCTTCCAAGAGCACTGCCCTGACCTGGAGCGGCAGGAGGCCGAGGTGCACAAGCTCAACCAACGTTTCAACAACCTCAGCCAGCAGGTGGAACGGAG
Seq A exon
GTGAGGGGTGCCAGACTGGTGGGCTGGAGCGAGGGCCTGGCTTAGCCGGCCTGCCTTCAAACACTAGGCCAAGGATCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCATGTTCATATGCATGTGTGTACCTGTGGGGGGATACTTGTTCAGGTGGAGGTTCTAAGTTGGTGTCAGGAATCATCTTTGATCATTCCTCTACCTTATTCACTGAGGTAGGATTTCTCAGTCGAGCCCATGCTCACATAGCTAGACGCTCTGGTCAGCTTACTTACGCCAGGGCTCCCATGTCTACCTGTTAGGGTTGAACTTACAGTTTAGCCAAATGCCCATGCAGAATTAACATGGGTTCTAAGGATCCAGACTCCAGTCCTCATGCATGCACAGTATTTAGCCCTTAACTGCCGAGCCATCTCCTTAGCCCAAGTGCCCTTTTTAAAAAATAAATAAATAAAAATGAAAATGACACATACAAAGTAAGAAACTATGTGTGCAATGACCAGATGACCTGTCTTCAGGTAAGCCATCAGCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATGGTCCATATGTGTGTGACAGTGTATACATTATGGAATGTATGGAGATCAGAGGATCATTTTGAATGCTCTCGATTTCTACCCTTTATACAGGGTCTCAGTTCACCATTGCTGAGTCAGGCTAGCTGGCTGGAGGCTTCCTGGCCTTCCCCCAATTCTTCCCGTCTCCCTATAGGAACCCTGGAATTAGAGACGCCTATGTCTGGCTTTTACATAGGGTCTGGAGAGCTGAGCCCAGGTGACCAGGCTTACACCTCAAGTGCTTTCCCCACTAATGCACCTCCCAGCCTCACCCTACCTGCCTAGCTCCACCCATTTCCCCACACACCCACTCCATGGGCAGGTGGATGTGCAGGCTCTTCTTGTCTTTCTTCTGAGGCTCTGCCTGAGTTGTCTCCCCCACACCACTTCTGCTTGTATGCTAGAGTGCACATTTCTAGTAAGTCTGTCTGCGGTTGACAGGCTTATGATCATTTCAAAGACCAGCTTCATGTTCCAGAGCTTTCTCCCTGTGTCCCCTTTCCCTCAAGGCCTTTATGTGGATTACACTGGCTTTAATGTGTATCTCTCTCCATTTCTTACCTTGGAAGCTTGGATCGTTGTTTAAAGGTAGTTTCCCTTTCCCCCTGTATGCATTTAACACTGTGCAAGTACTGCTTCCGCCCTGCTCCAGCAATGTTGACATTTTCTTCCTGAGGAAACAGGATTTCCCACCCTCCATGTGCCCTTTCTTTGTTCAAGAGATATACAGTGCACCCCTCTGCCTGTCATGCTTAACCACTCTCTTTCTCTTGACCATTTGGGAACTTGTCCAGTCCAGTTACATTTGGCTTTTCCACTGCCTTTCAAAACTCAGTGTGGCTAGGAAGATAGTTTCAGTCACACAAGCATGAGGACCCAAGTCTGATCCCCAGCACACATGTAGACGGTAGGCATGGTGGTACACATTTATAATTCTAGAGCAAGAGAGGCAGGAATAGGTAGATTCTGTGGGGCTTACTGGCCAGTCAATCTGACCTACTTACCCTTCCCGCCACACACATACACACACACACACACACACACACACACACACACATACACACACACACACACACACACACACACACACACACATACACACACACACACACACACATACACACACACACACACACACACACATACACACACACACACACACACACACACACACATACACACACACACACACACACACACACACACACACATACACACACACACACACACACACACACACACACACACACACACACACACACACATACACACACACACACACACACACACACACACCAAAAGAGGACCTCCCAAAACTGAGGGGTCAGTGAGGTTCTTGCCTGCTACACAGAGAGACCTGACTGGTTGGTCCCCACAG
Seq C2 exon
GGCCCAGAGCCTGCAGAGTGCCAGGGCTGCCTACGATGAATACTGCAGTGGTTACAACCGTGTGCTCCAGTTTTTGGCCAAGACTCCCAGTTATGAGCCCCAGGAGACAGACAGCCTCGGCCAGATGGAGACCAAGCTCAAGAACCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039457-Ppl:NM_008909:17
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.246 A=NA C2=0.333
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=FE(62.1=100)
A:
NA
C2:
PF0043516=Spectrin=PD(5.8=11.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: