RnoINT0116058 @ rn6
Intron Retention
Gene
ENSRNOG00000002930 | Ppl
Description
periplakin [Source:RGD Symbol;Acc:1305511]
Coordinates
chr10:10680533-10682638:+
Coord C1 exon
chr10:10680533-10680726
Coord A exon
chr10:10680727-10682487
Coord C2 exon
chr10:10682488-10682638
Length
1761 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
GACTGGCTTTGTCCCCTCAGGGC
3' ss Score
10.09
Exon sequences
Seq C1 exon
GCCATGGCTTCTGAGCTGCAGGCCCAGAAGTCCCTCCTGGGTGAGGTGGAACAGAACCTGCAGGTGGCCAAGCAGTGCTCCAGCTCACTGGCCAGCCGCTTCCAAGAGCACTGCCCTGACCTGGAGCGCCAGGAGGCTGAGGTACACAAGCTCAACCAGCGTTTCAACAACCTCAATCAGCAGGTGGAACGCAG
Seq A exon
GTGAGGTGCCACAGATAGGTGGGCTGGGGCAAGGGCCTGGCTTAGCCAGCCTGTGTCTTAAAATACTAGGCCAGGGATAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGAGAGAGAGAGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGTGTGCAGTGTACCTGTTCATGTGCATGTTTGTACGTGTGGGGGAATACTTGTTCAGTGAAGCCCATGCCAACATAGCTAGACTGACTGGTCAGCTTACTTACGCTGGGAATCCCATGTCTACTTCCTAGGGTTGAACTTACAGTTCAGCCACATGCCGATGCAGAATTTGAATGGGTTCTAAGGATCCAAACTCCAGTCCTCATGAATATACAGTATTTAGCTCTTAATTGCCGAGCCATCTCCCCAGCCTGAGTGTGCTTTTAAATTAATTAATTAATTAATTAATTAATAAAGTGACACATACAAATTAAGAAACTCTGTGCAATGATCAGCCACCTGTCCCCAGGTAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGTATGATCCATGTATGTGTGTCAGAACTATGGAAATGTATGGAGGTCAGAGGATCATTTTGAATCTTCTCACTTTCTACCTCTTTTACAGGGTCAGTTCACCATTGCTGGGTCAGGCTAGCTGGCTGAGGACTTCCTGGTTCTCCCCCATTTCCTCCCATCTCCCTGTAGGAACACTAGAATTATAGACACTTATAGACACCTATGCCTGGCTTTTCCATAGTAGTAGACTGCTGAGCCAAGGTGATCGGACTTACACAGCAAGTGTTTTAACCCACTAATGTGCCTCCCAAGCCTCACCCTACCTGCCTCTCTCCACCCATCCCCACACATCCACAGCACGGGCAGGTGGATGTGGCAGCATCAGTGTAAACTGTTGCTTGTCTTTCTTCCTGGGCTCTGTCTGTGTTGCCCCCCCCCCACTTCTGCTTGTGTGCTACAGTGCATATTTCCAGTGAGTCTGTCTAAGGTTGACAGGTTTATTATCATTTAAGAACAGCGTTGTGTTCTAGAGCTTTCTCCCCTGTGCTCCTTTTCCTTAACTTCCTTCATGTGGATCACCTTGGGATTAATGTGTATCTCTTTTCTTTTCTTACCATGGATGTTTAGATTGTTGTTTCGAGGGAGTTTCCCTTTCCTCCTGTAAGCATTTAACACTGTGCAAGTACTGCTTCCGCCCCGCCCCAGCAATGCTGAAATTCTCTTCTTGAGGAAACAGAATTTCCCAACCTCCATGTGTCCTCCTTTGCTCAAGTGATACACAGTGAGCCCCTCTGCCTGTCAGGATGTGGCTCCTAACTGTCCTATTAATAATCCATGTTTAACCATTCTCTTTCTGTTGACCATTTGGGAACTTGTCCAATTCAGTTACGTTTGGCTTTTCTACTGTGGCTAGGAAGATAGCCTCAGTCAGAATACACTTTGTCACACAAGTATGAGGACCCAAATTTTATCTCTAACACACATGTAGAGGGTAGGCATGGCGGCCCAGATTTATAATGCTAGAACTGGGGAAGCAAAAATAGGTGGATCCTGTGGCGTTTACTGGCCAGTCAAACCCTCTCCCCTACACAAACCTAAAGAGGACCTCCAAAAACTGAGGGATCGGTGAGGTTTTTTGCCTGCTATAAAGAGAGACCTGACTGGCTTTGTCCCCTCAG
Seq C2 exon
GGCCCAGAGCCTGCAGAGTGCCAGGGATGCCTACAGTGAATACTGCCGAGGTTATGACCATGTGCTTCAGTTCTTGGTCAAGACTCCCAGTTATGAGCCCCAGGAGACAGACAGCCTCAGCCAGATGGAGACCAAACTGAAGAACCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002930:ENSRNOT00000004026:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.415 A=NA C2=0.392
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTCTGAGCTGCAGGCC
R:
TGGTTCTTCAGTTTGGTCTCCA
Band lengths:
335-2096
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]