GgaINT0014071 @ galGal4
Intron Retention
Gene
ENSGALG00000003917 | CYP2W1
Description
cytochrome P450, family 2, subfamily W, polypeptide 1 [Source:HGNC Symbol;Acc:HGNC:20243]
Coordinates
chr14:2247339-2248058:+
Coord C1 exon
chr14:2247339-2247480
Coord A exon
chr14:2247481-2247870
Coord C2 exon
chr14:2247871-2248058
Length
390 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGA
5' ss Score
6.95
3' ss Seq
CCTCTCCTGGTTGTTTTCAGGAC
3' ss Score
11.09
Exon sequences
Seq C1 exon
GGTACAGAGATTATACCGCTGCTGACCTCTGCTCTGAATGACGAGCTGCACTGGAAAACCCCACATCAGTTCAACCCATCCCACTTCCTGGACGCTGATGGGAACTTTGTTAGGAGAGAGGCATTTATTCCATTCTCCATAG
Seq A exon
GTGAGAGGGGTAATTTGTGCCCATCCTGGGGCCAGCCTAACAGCACCGTGCCCACTGACCCCAGGGAAGTATGTAAGTGAAGGACACTGATAAGGCAGGATAAGAGGTTTCTGGCCATTGGTCCTGTCCACCACTGCTATAAACTGCTGTTCCTTGGGAGATCTGGCAGACACTGATTTACCCCCAGGCACTGGATGATCTCACACACCTACAGGCTTCCAGGCAGCTTGACACTAAGTCAGCAGTACCCCCCTCCCCAACATACCGAGAAAAGGAAGGAAAAGCTTCCTACCTCATCTGCACAGACTGCATGTCCAGTTTAGAAGGTCTCAGATGCCATCACCAACAGTTCCACTACTTAACATTTACTCCTCTCCTGGTTGTTTTCAG
Seq C2 exon
GACGAAGGGCTTGTGTTGGAGAAGGCCTGGCCAAAATGGAGCTGTTCCTCTTCTTCGCAGGCTTGCTCCGCAGATTTGTTTTCCAGCCCCCTCCAGGGGTGAACAAAGCAGAGCTAGATCTCACTGCTGATGTTGGCTTCACCCTGAGCCCCATGCCTCACCTGGTCTGTGCTGTGCCCTGCAAATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003917:ENSGALT00000006238:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.3=100)
A:
NA
C2:
PF0006717=p450=PD(12.4=90.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAGATTATACCGCTGCTGACC
R:
TCATTTGCAGGGCACAGCAC
Band lengths:
326-716
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]