GgaINT0014443 @ galGal3
Intron Retention
Description
NA
Coordinates
chr14:15635037-15635379:+
Coord C1 exon
chr14:15635037-15635164
Coord A exon
chr14:15635165-15635279
Coord C2 exon
chr14:15635280-15635379
Length
115 bp
Sequences
Splice sites
5' ss Seq
TGGGTAATT
5' ss Score
6.19
3' ss Seq
CCTTTATCTTCATTTTAAAGATA
3' ss Score
8.23
Exon sequences
Seq C1 exon
GATGATCCAGAGAAAACAAAGGCAACAGTCCGTGGGGATTTCTATGTTACTGGAGACAGGGGGCTCATGGATGAAGATGGATACTTCTGGTTTGTTGGAAGAGCTGATGATGTCATTAATTCTGCTGG
Seq A exon
GTAATTCAACACTGATTAACAATACATCTTCCAGCACCAATAATAGAGCTGATTCAGATAAGATGTGTTTATGTGTTTCAAGTACAAATAAATAACCTTTATCTTCATTTTAAAG
Seq C2 exon
ATACCGCATTGGACCATTTGAAGTAGAAAGTGCTCTAATAGAGCATCCTGCAGTGCTGGAATCAGCTGTTGTCAGCAGTCCAGACCCCATCAGGGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002200:ENSGALT00000003444:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.047 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=PD(9.9=95.3)
A:
NA
C2:
PF131931=AMP-binding_C=PU(32.1=76.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATCCAGAGAAAACAAAGGCA
R:
CTGATGGGGTCTGGACTGCT
Band lengths:
219-334
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]