MmuINT0010260 @ mm9
Intron Retention
Gene
ENSMUSG00000030935 | Acsm3
Description
acyl-CoA synthetase medium-chain family member 3 [Source:MGI Symbol;Acc:MGI:99538]
Coordinates
chr7:126924264-126924581:+
Coord C1 exon
chr7:126924264-126924391
Coord A exon
chr7:126924392-126924481
Coord C2 exon
chr7:126924482-126924581
Length
90 bp
Sequences
Splice sites
5' ss Seq
TGGGTAATT
5' ss Score
6.19
3' ss Seq
TTCCTGTCATGTTTTCCTAGTTA
3' ss Score
7.01
Exon sequences
Seq C1 exon
GATAATCCTTCCAAAACGGCTTCAACTCTACGAGGGAGTTTCTACATTACTGGGGACAGAGGATATATGGATGAAGATGGCTATTTCTGGTTTGTTGCAAGATCAGATGATATCATATTATCTTCTGG
Seq A exon
GTAATTTTCTTTTCCATATATGCATGTCTACTTATCAAGCATTCTGGGGTGACTCTATAGCTCAACCTTATTCCTGTCATGTTTTCCTAG
Seq C2 exon
TTACCGAATTGGACCATTTGAGGTAGAAAGTGCCCTCATAGAACATCCTTCCATCGCAGAGTCAGCTGTTGTCAGCAGTCCAGACCCCATCAGAGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030935-Acsm3:NM_016870:13
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.042
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=PD(9.9=95.3),PF148391=DOR=PU(23.1=93.0)
A:
NA
C2:
PF131931=AMP-binding_C=PU(32.1=76.5),PF148391=DOR=FE(19.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCTTCAACTCTACGAGGGA
R:
CAGCTGACTCTGCGATGGAAG
Band lengths:
180-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: