GgaINT0015061 @ galGal3
Intron Retention
Gene
ENSGALG00000006520 | MYH11_CHICK
Description
NA
Coordinates
chr14:7643456-7644597:-
Coord C1 exon
chr14:7644483-7644597
Coord A exon
chr14:7643650-7644482
Coord C2 exon
chr14:7643456-7643649
Length
833 bp
Sequences
Splice sites
5' ss Seq
ATGGTATGA
5' ss Score
6.56
3' ss Seq
CATGTTCTTTTATATTGCAGTGG
3' ss Score
8.68
Exon sequences
Seq C1 exon
GTTACCTACAATGCAAGTGCCTGGCTGACAAAGAACATGGATCCACTAAACGATAATGTGACTTCTCTGCTGAACCAGTCTTCAGACAAATTTGTGGCAGACCTTTGGAAAGATG
Seq A exon
GTATGAATCACAACTCTAAACCATTAATGTGGTTTAAGGGGAGAAACTTGTACCAGAACTGTTCTTTCAGCTCTCCCTTATGAGTGGGAAACAAGTATGAAAATGATAAGAGTGGAAGAGATTGATCTAAGAAACAAGAGTACTCTTTTCTAAATAGTTCTGAAAGCATAAATAAGTATAACAAAGCAGAAAGCATATTAGATAGTTAAGTACTAGCAAAGTAATTTCCTTACTTAATATTATTCAGCAACGTAATCAGAAATATTCATTATGCTACTATAATGTTATGGAATATATCAGACAGCTCATTTAATACACTGTCACTGTTGTTATGAAAGACTGTGTGCAGTCCTTAACTTACATGCTCCTCTCCCAAAAATTCTACTACAGTTCTCTTCAGCAAAGTTTTATCTCAAATAAACTCCACTAGAAGAATATCTGTATGTATAGAAAACACAGCATTTGTTTAAAAATTTTCCATGGCTCTGTAAGATGCATACTACACTGTACGTATTTAATGGCTGTCACACACTGTGACACAACCTACCAGCAGGGATACTTTGCAGGACTGTCCTTCATAGAGCAGCCATAAAACATGTTCTATGTATTCAATTGTTCCATTCTTCCACTAGTTAACAAAAATCCTTATTTTCGAGTTAGACAGAGATAGACTATTTACCCAGAAATATCTTCTAATGCTTTCATTAGCATGCATCAAAAGTATTTTGGTCCTCTTTTGGAAGTTACGCTTTAGCAATGACAGAGAAAAGTATAATGTGAGGTGAAGACAATTTATATAAGCAGTCCCATTCACATGTTCTTTTATATTGCAG
Seq C2 exon
TGGATCGTATTGTTGGTCTAGACCAGATGGCCAAGATGACTGAAAGTTCACTGCCTAGCGCTTCAAAAACCAAAAAAGGCATGTTCCGTACTGTGGGCCAACTCTATAAGGAGCAGCTGACCAAACTGATGACCACCTTAAGGAATACCAATCCCAACTTTGTCCGCTGCATCATTCCAAATCATGAAAAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006520:ENSGALT00000033605:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=NA C2=0.046
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.6=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(9.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTACCTACAATGCAAGTGCCTGG
R:
TTCATGATTTGGAATGATGCAGCG
Band lengths:
302-1135
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]