BtaINT0097125 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015988 | MYH11
Description
myosin-11 [Source:RefSeq peptide;Acc:NP_001095597]
Coordinates
chr25:14253880-14256922:-
Coord C1 exon
chr25:14256808-14256922
Coord A exon
chr25:14254074-14256807
Coord C2 exon
chr25:14253880-14254073
Length
2734 bp
Sequences
Splice sites
5' ss Seq
ACGGTAAGG
5' ss Score
10.38
3' ss Seq
CACCCTCCATGTGCCCGCAGTGG
3' ss Score
9.37
Exon sequences
Seq C1 exon
GTGGACTACAATGCCAGCGCCTGGCTGACCAAGAACATGGACCCGCTGAATGACAATGTGACTTCCCTCCTCAACGCCTCTTCTGACAAGTTTATGGCCGACCTGTGGAAGGACG
Seq A exon
GTAAGGCTCTGTTTGCTGGAGCAGGAGAACTGAACTCCCTCCAACCCTTCCCAGCTGCCCCTATTCCCACACCTGCTCCCAGGAGGGACGGGGCACCAATTCCTGAGCCCCTCAACCCAGTACCTGGACCCTATGGAGAAGGTCCTGAGTCAGGGCTCAGATGCTGATGGAGGAAATGTCTTAGGAGGTATGTTGGGTCAGAGCGCCCCCTTGTGGAGTTAGAGAGACTTAACTGCACTCTCATCTCTGCCATGTACCAGCTGTGTGACCTCAGACAAGTCACTTGACTTCCTTAAGCTCCACTGTCCTCTTTGGTGAAAGTGAAAGTCACTTAGTCATTTCAGACTCTTTGTGACCCCATGGACTGTAGCCTGCCAGGCTCCTCTGTCCATGGAGTTCTCCAGGCCATAATATTGGAGTGGGTAGCCATTCCCTTCTCCGGGGGATCTTCCCAACCCAGAGATTGAACCCAGGTCTCCTAAATTGCGGGAGGATTCTTCACCCTCTGAGCCACCAGGGAAGCCCAAGAATACTGAAGTGGGTAGCCTATCCCTTCTCCAGCAGATCTTCCCAACCCAGGAATTGAACTGGGGTCTTCTGCATTGTAGGTGGCTTCTTTACCAGTTGAGTTAATCTCCCATCTTCCCTAAGATTACTGTGAGGGTGAAATCAAATCAGTGGGGCCAAGTTTGAGCATGGATCAAGATCTCTGGAACGCTTGTTAAAGCTCATGATCACTGGACCCCATCACCGGAGGGTCTGATTCAGCAGGTCTGGACGGAGCCTGAAAATCCGTATTTCTAACAAGTTCCTAGGTGGCGCTGATGCTGCTGGTCTGGGGACCACACTTTTTTCCCCTTAAGAACCAGAGAACAGATAATCCAAGTGAAGTCTAACACCTGCTGGGCCCACAGTAGGGACTTGGTACACATTGGCCCGTGATGACTATTAGGTGGTGGGCTGGGCCCACAGTAGGGACTTGGTACACATTGGCCCGTGATGACTATTAGGTGGTGGGCTGGGCCCACAGTAGGGACTTGGTACACATTGGCCCTGTGATGACTGTTAGGTGGTGGGCTTTGCTGCTTTTGCCCCTGGGCCTCAGCGCTTACAGCAGATTTCACTCTTGACACAGAACCTGTGGGTCCAGGGCTTACAGGACTAGCTGTCCTTGCTTTAGGGACAGGGGTCAGTTCTGCCGACATTTACTGAGTGCCAAGGCCCTTGGAATGGGGTAACAGCATCTCAGCCCAGGTTATATATCACCTGGGACTCACGATAAACTCTGAAACTCCTTCCTTCAAGGAGCCCACAGTCTTATAGGTGAGGTAGACAAGCAAAGACATTATTCAGTTCAGTTCAGTTCAGTCGCTCAGTCGTGTCCGACTCTTTGCGACCCCATGAATCGCAGCACGCCAGGCCTCCCTGTCCATCACCAACTCCAGGAGTTCACTCAGACTCAGTCCATCGAGTCAGTGATGCCATCCAGGCATCTCATCCTCTGTCGTCCCCTTCTCCTCCTGCCCCCAATCCCTCCCAACATCAGAGTCTTTTCCAATGAGTCAACTCTTCGCATGAGGTGGCCAAAGTACTGGAGTTTCAGCTTTAGCATCATTCCTTCCAAAGAAATCCCAGGGCTGATCTCCTTTAGAATGGACTGATTGGATCTCCTTGCAGACATTATTACATGGAGCCTACCCGAACACATGGAGCAGAAGTGCTGGGTCTAATGTCAGTGGGGTTGACCTCCACACCACCACCAACCAGCTGGATACAGTCAACTGTGTGTGTGTGTGTTAGTCGCTCAGTTGTATCCAACTCTTTGTGACCCCATGGACTGTAGCCCACCAGGCTCCTCTGTCCACGGGATGCTCCAGGCAAGAACACTGGAGTGGGTTGCCATCTCCTCCCCCAAGGGATCCCTGTTTTATCTTTCTAAGCTCACCTTACCACTCAAAATATTGTATACTTGCACGCTTGATCATTATCTGCCTCCTTCTGTTGGAATAACCATAGAATATGAGCTGGGGTCGAGGGGGTACACAGCGTCTGGATTTTGTTCATGTCTGTATGCCCAGGGCCTGGCACACAGAAGGCTCTCAATAAATATTTGTTGGTGGATGAAGGATTGAAGGCATGCAGGGAGGTAAGCCCTTTGCAGACCTTATTCAATTATTCCTGCCCTAGGAGGTAGATGCTGTTATTACCTCCACTTCCCTGGTGTCTCAGCTGGTAAAGAATCTGCCCGCAATGCGGGAGACCTGGGTTCAATCCCTGGGTTGGGAAGATCCCCTGCAGAAGGAAACGGCTACCCACTCCAGCATTCTGGCCTGGAGAATTCCATGAACTCTTTGCATCCATGGAGTCTCAAAGAGTCAGACACAACTGAGTGACTTTCACTTTCACAGAAGGAGAAACTGAGGCACAAAATGGCACCAGGGCAAGGCGGTGGCAAGAGCAGGATTTACCCCCAAGTCTCTGTAACAGTGTCAGAGAGAATGTGTTATTTTTGTCATTCGGGAGTTCTCAGGGTCTCAGCAATACATAATAGTTGGAAAGCAACCCCCGACACCTCCCTTTACCTATCACTAGAGGGAAGGTAGTGGGGGTGGAGGAAAGAACCCCATGAGAATGAGCAGGGGACTTGGGGTCTCCATGCTCCGGGTGGCCTCCTGGCCTGCTGTGGGGGTGCAGAGCCCCTGGTGGGCTGACACCACCCTCCATGTGCCCGCAG
Seq C2 exon
TGGACCGCATCGTGGGGCTGGACCAGATGGCCAAGATGACGGAGAGCTCGCTGCCCAGCGCCTCCAAGACCAAGAAGGGCATGTTCCGCACAGTGGGGCAGCTGTACAAGGAGCAGCTGGGGAAGCTGATGACCACACTGCGGAACACCACACCCAACTTCGTGCGCTGCATCATCCCCAACCATGAGAAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015988:ENSBTAT00000035455:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.046
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.5=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(9.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]