GgaINT1018537 @ galGal4
Intron Retention
Gene
ENSGALG00000006520 | MYH11
Description
myosin-11 [Source:RefSeq peptide;Acc:NP_990605]
Coordinates
chr14:7576942-7578082:-
Coord C1 exon
chr14:7577968-7578082
Coord A exon
chr14:7577136-7577967
Coord C2 exon
chr14:7576942-7577135
Length
832 bp
Sequences
Splice sites
5' ss Seq
ATGGTATGA
5' ss Score
6.56
3' ss Seq
CATGTTCTTTTATATTGCAGTGG
3' ss Score
8.68
Exon sequences
Seq C1 exon
GTTACCTACAATGCAAGTGCCTGGCTGACAAAGAACATGGATCCACTAAACGATAATGTGACTTCTCTGCTGAACCAGTCTTCAGACAAATTTGTGGCAGACCTTTGGAAAGATG
Seq A exon
GTATGAATCACAACTCTAAACCATTAATGTGGTTTAAGGGGAGAAACTTGTACCAGAACTGTTCTTTCAGCTCTCCCTTATGAGTGGGAAACAAGTATGAAAATGATAAGAGTGGAAGAGATTGATCTAAGAAACAAGAGTACTCTTTCTAAATAGTTCTGAAAGCATAAATAAGTATAACAAAGCAGAAAGCATATTAGATAGTTAAGTACTACCAAAGTAATTTCCTTACTTAATATTATTCAGCAACGTAATCAGAAATATTCATTATGCTACTATAATGTTATGGAATATATCAGACAGCTCATTTAATACACTGTCACTGTTGTTATGAAAGACTGTGTGCAGTCCTTAACTTACATGCTCCTCTCCCAAAAATTCTACTACAGTTCTCTTCAGCAAAGTTTTATCTCAAATAAACTCCACCAGAAGAATATCTGTATGTATAGAAAACACAGCATTTGTTTAAAAATTTTCCATGGCTCTGTAAGATGCATACTACACTGTACGTATTTAATGGCTGTCACACACTGTGACACAACCTACCAGTAGGGATACTTTGCAGGACTGTCCTTCATAGAGCAGCCATAAAACATGTTCTATGTATTCAATTGTTCCATTCTTCCACTAGTTAACAAAAATCCTTATTTTCGAGTTAGACAGAGATAGACTATTTACCCAGAAATATCTTCTAATGCTTTCATTAGCATGCATCAAAAGTATTTTGGTCCTCTTTTGGAAGTTACGCTTTAGCAATGACAGAGAAAAGTATAATGTGAGGTGAAGACGATTTATATAAGCAGTCCCATTCACATGTTCTTTTATATTGCAG
Seq C2 exon
TGGATCGTATTGTTGGTCTAGACCAGATGGCCAAGATGACTGAAAGTTCACTGCCTAGCGCTTCAAAAACCAAAAAAGGCATGTTCCGTACTGTGGGCCAACTCTATAAGGAGCAGCTGACCAAACTGATGACCACCTTAAGGAATACCAATCCCAACTTTGTCCGCTGCATCATTCCAAATCATGAAAAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006520:ENSGALT00000010534:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=NA C2=0.046
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(6.2=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(10.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTACCTACAATGCAAGTGCCTGG
R:
TTCATGATTTGGAATGATGCAGCG
Band lengths:
302-1134
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]