DreINT0099801 @ danRer10
Intron Retention
Gene
ENSDARG00000100972 | myh11b
Description
myosin, heavy chain 11b, smooth muscle [Source:ZFIN;Acc:ZDB-GENE-101124-2]
Coordinates
chr3:36555729-36556159:-
Coord C1 exon
chr3:36556045-36556159
Coord A exon
chr3:36555929-36556044
Coord C2 exon
chr3:36555729-36555928
Length
116 bp
Sequences
Splice sites
5' ss Seq
ATGGTCAGT
5' ss Score
6.57
3' ss Seq
AAATGCCGGTGTTTCCACAGTGG
3' ss Score
6.41
Exon sequences
Seq C1 exon
GTGGACTATAATGCCATGTCATGGTTGACTAAAAACATGGACCCACTCAACGACAACGTCACAGCATTGCTGAGCAACTCATCCAGTGCTTTTATTCAGGACATCTGGAAAGATG
Seq A exon
GTCAGTCTTTGCCTGAATAAGTAATAATATGGATTGCTCAAGTCTGTTTGAAAAGCAGAAGAGACTCCTTCATGTTATTAAAATGTATCTTGTAATAAATGCCGGTGTTTCCACAG
Seq C2 exon
TGGACCGTGTGGTGGGTTTGGAAACCATGGCTAAGATGGCCAAGTCTGACAGCTCAGCTCCTGCTGCTTCCAAGTCCAAGAAAGGCATGTTCCGCACCGTCGGGCAGCTGTACAAAGAGTCCCTCGGCAAACTCATGACCACTCTTCATAACACTCAACCAAACTTTGTGCGCTGTATCATTCCCAACCACGAAAAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100972:ENSDART00000166896:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.060
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.7=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(9.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGACCCACTCAACGACAAC
R:
ACAGCGCACAAAGTTTGGTTG
Band lengths:
255-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]