RnoINT0096348 @ rn6
Intron Retention
Gene
ENSRNOG00000057880 | Myh11
Description
myosin heavy chain 11 [Source:RGD Symbol;Acc:3136]
Coordinates
chr10:816459-819703:+
Coord C1 exon
chr10:816459-816573
Coord A exon
chr10:816574-819509
Coord C2 exon
chr10:819510-819703
Length
2936 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGC
5' ss Score
9.26
3' ss Seq
ACCCTTCATGTACCCCACAGTGG
3' ss Score
7.24
Exon sequences
Seq C1 exon
GTGGACTATAATGCAAGTGCGTGGCTGACCAAGAACATGGACCCGCTAAATGATAATGTGACCTCACTCCTCAATGCCTCCTCGGACAAGTTTGTGGCCGACCTGTGGAAGGATG
Seq A exon
GTAAGCGCCTCTTGCCCTGACACAGCTTTATGCCAGAAGGCTGAATACCTCAGACCTACTTCCTGCTTATATATCTGCCCCAGAGTGGAAGGCCTCAAGTGGGAACAGGGAAAGGACCAGGCTGTCACATGCCCATGCTATCCCATCAAGACAGGTTTGTTCATACAAACACAATTCTCTCTTTATAGAAAGTACGAGCTTATCCTTAGCTGAGTGGGAGTGACTGTGGATGGAGAAGTCAGGTTCAGGATATCCCAAATGGCGTGTCTCAATGTGAAAACGGTTTTATGAGACTTTAATGTCCTAGAACAAAAGGAAGTCGTAAATCAAGGCAATCTTTTAAAGTCTCTGGTGGGGACCTAATAATATCCTTAGCTTTGGGGCCAATGGAAGTTGGTAGTCTGTTAATACAGCCCCAAAGGTTTCATATGATAGTCAGATTAATATTAGGTCAGGCATGGATGCAGACAATAAATGGTCATTAGGAGCTAAAGATAGCCCAAGATGATTTGGCTCTGAATCTGCAACATTCCAAATCTCCATTGTTAACTAATCTGTCAGCCTTGTAGAATCTTTAAAATAGATCTGCCCCTTTTCTGGAAAATTCAGTTTATAGCCTCTTCTTAAAGAAGGGACACTAAGTTTCCCCATCCCATTCCTGGATTCATGGAGAAGGTTCTGGTTCACAGTTAAGGAAGTGGTGTAACTGGGCATGATAGAGCAGTCCAGTCCCCTTCTGAAATCAAAAGGATGCACATCACAGACTCTTTTTGTATCTGCCATGTATCAGTATGACCTTGGACATGTTGACTAACTTTGTTGAGCTTGGATGTCTTTTGACCTTCATACTGAAGTCTTTCCATGGAGATCTCTGGCCCAGCCAGGTATGAGGATTCAGACAAAAGGGAGAGAACTTGAACAGGGAAGGGCAACCACTTCCACTAACTCTGCTGCTGCCACAGCCACTTCAGTTGCCCTAAGCAGGGGGCTGGCTGGCAAGCGAATGAGGGGTGCAGGGGAGCGTCTAGCAGTGATTTCAGGAGAGCAGATCTCTTTCCCAAGTGGCAGTGTTATAGTTCTTATGACAGAGCTCTCAGACTACGGAGTAGTTCTCATATACCTTTAATCCTTCTGGATAGGATTCTTATATACACTTTTGGGGTGGGTCAGGGTCTGACAGCAGGTACTTCCTATTGGCTTGGCCTGAGATCTTGGGAACACTTCATCTACACGTAGGAGGGCATGGTCCTGATTCTACTAACTGATGATCACAAGCCTCTCTACAGGGGCCTCTTGGGGTGGGGCTGTAGCTATGTGCCTGGCCTCCTAGTAGTTTAGGGAAACGCCTACTGTCCCTTTCAGAGTCACCAGGCTTCAACCTTATCTCAACTAGGAACCAGGATACCTTTCACAGCCCGCCACCCAGACATCCTTATTTGTAAACTGGGTCAATATCACATCTCACTTGCCCTAGGAATTGCATGAAATTGCTCTTACTAGTGGTTCTCAGCCTTGCACCAGGGCCCCCGTATTAAATCACAGGCTGAGGCTAGAGCTGGGTCCCAGCTAGTGCAGTGTCAACTGGGCGTGATGGTAGCACCTGCTGGACTCTTGAAGATTCTCATTCCATCCTCGAGAAGGCATGGAAAGACTATGGCTATGTGTCAGGCCACCTGCCCAAAGCAGAAGCTCCCCTGTGCTGAGATTACCCACTAATGCCTGCTCTATCGAGCACTTACCAGTGTGCCCAGTTCCTCCTCAGAGCACTTGCTGTATCTTCTAACTAGAATGCCCTTTCATTGGATAACTGTGTCTGCACAGACAGATGGTAGGCCACCATACCTCCCACTTTTCTGTAACTTCTCAGAGATCACCTTTTCAGACGGACATTCCTCTTTTCCCTGTCACTCTTCCTTCTCCTCTTGTCCCATCCTTTCTCTCTTCTTTTTTGCTCCTTTCTTCTCCTCCTCCCTTTATCCTTGATTTTTCTAACCAGAGCTCACCACCTGATATAGTACACTTCATTGTCTGCCTCCTGTTATAGATCAGTAACCTCTGGGGAGAAATGGCCAGGGTCTTTGGTAAGTGCTTGGGGCCCAGACACAGTCAGTTCTCAGGAAATCTCTGGGGATAAAGGAAGAATTGAAGGCTACTGTGGAGCTGAGAGCTCTCTGCCTTGTGTCCACATTGCATCCTTAGCAGTTAGATACTGCTATCACTACCATTAAGAAAGGGAAACTGGAACGGAGAGATAGCTTGGTGGTTAAGAGCACTGGCTACTCTTCTAGAGGTCCTGAGTTCAAATCTCAGCAACCACATGGTGACTCACAACCATCTGTAGTGAGATCTGATGCCCCTCTTCTGGTGTGTCTGATAATAGCTACAATGCAGGGTTGGGGATTTGGCTCAGTGGTAGAGCGCTTGCCTTGCAAGCGCAAGGCCCTGAGTTCAGTCTCCAGCTCTGAAAAAAAGAAAAAAGAAAAAAAAAAGAAAAGAAAAAAATAGCTACAATGCACTTATATATAATAAATAAATCTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAACTGAACTCAGACCATGGTGCCAGGCTACCAGTGACTTAATACCAAGAATGATACTGACTCCTTTGTTTTCTGTGACAGGAACAGAGGACATTGGCTTATCCTGCCACTCAGGTGCCCTCAAGGATGCCTAATACTACTTAGAGGCTATTTTCCCAGCTCTGACTCTGCTAGCAGTAGAAACACTGACCACCAGAGGGAAAGATAGGGGATGGTACTCCAGATGGGATCTGTCATTTCCCATACAGTATCACCCATACAAAATGCCCGCCTTGATCACCATCTTCACAGCTCAGTCCTCTGGCTTGTGGCAGATCCTAGAAGCTGATGTCACCCTTCATGTACCCCACAG
Seq C2 exon
TGGACCGCATTGTGGGGTTGGACCAGATGGCCAAGATGACTGAGAGCTCACTGCCCAGTGCCTCCAAGACCAAAAAGGGCATGTTCCGCACCGTGGGCCAGCTCTACAAAGAGCAGCTGGGGAAGCTGATGACCACACTGCGCAACACCACGCCTAACTTTGTGCGCTGCATCATCCCCAACCATGAAAAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000057880:ENSRNOT00000084608:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.044
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.5=100)
A:
NA
C2:
PF0006316=Myosin_head=PD(0.4=15.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]