GgaINT0015064 @ galGal3
Intron Retention
Gene
ENSGALG00000006520 | MYH11_CHICK
Description
NA
Coordinates
chr14:7642713-7643082:-
Coord C1 exon
chr14:7643013-7643082
Coord A exon
chr14:7642874-7643012
Coord C2 exon
chr14:7642713-7642873
Length
139 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGG
5' ss Score
9.33
3' ss Seq
GTATCCCTGTTTTCCTCCAGATC
3' ss Score
10.83
Exon sequences
Seq C1 exon
ATACGAAATTCTTGCTGCAAATGCTATTCCTAAAGGATTCATGGATGGGAAGCAGGCTTGCATACTGATG
Seq A exon
GTAAGGAAAACAACTTCGATCCTACTGATAATCAGATCAACATCTCTTATATAAAAACTGTTGGGAATGAAAAAAATAATAATTTTTAATACTCTAAACTTCAGCTCTGGGATTAACAAGTATCCCTGTTTTCCTCCAG
Seq C2 exon
ATCAAAGCACTGGAACTTGATCCCAACTTGTACAGAATTGGACAGAGTAAAATCTTCTTCAGAACTGGTGTTCTGGCACACCTGGAAGAAGAGAGAGACCTGAAGATCACAGATGTCATTATTGCCTTCCAGGCTCAGTGCCGAGGCTACCTGGCGAGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006520:ENSGALT00000033605:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.4=100)
A:
NA
C2:
PF0006316=Myosin_head=PD(2.9=37.0),PF0061222=IQ=PU(81.0=31.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGAAATTCTTGCTGCAAATGCT
R:
TTTCTCGCCAGGTAGCCTCG
Band lengths:
229-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]