MmuINT0103263 @ mm10
Intron Retention
Gene
ENSMUSG00000018830 | Myh11
Description
myosin, heavy polypeptide 11, smooth muscle [Source:MGI Symbol;Acc:MGI:102643]
Coordinates
chr16:14223496-14223885:-
Coord C1 exon
chr16:14223816-14223885
Coord A exon
chr16:14223657-14223815
Coord C2 exon
chr16:14223496-14223656
Length
159 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
3' ss Seq
CCTTCTTCCTCCCTCCTCAGATC
3' ss Score
12.98
Exon sequences
Seq C1 exon
CTATGAGATCCTGGCAGCGAACGCCATCCCCAAAGGCTTCATGGATGGAAAGCAAGCCTGCATTCTCATG
Seq A exon
GTGAGCTTAAGCCTGGACCCTCCCAGACATCCAACTGTGGCCTCCCTGCTGTGGGTCACATTGCCAGTTGCTGATCTGGGTGGGATGGTTCTCAAGTACATGACACCACTGACTAAATGGCCCAGTTGAAAATGGAAACCCTTCTTCCTCCCTCCTCAG
Seq C2 exon
ATCAAAGCCCTCGAACTTGACCCTAACCTGTACAGGATTGGGCAGAGCAAAATCTTCTTCCGAACGGGGGTCCTGGCCCACCTAGAGGAGGAACGAGACCTGAAAATTACTGATGTCATCATGGCCTTCCAGGCAATGTGTCGTGGCTACCTTGCCAGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000018830:ENSMUST00000090287:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.4=100)
A:
NA
C2:
PF0006316=Myosin_head=PD(2.9=37.0),PF0061222=IQ=PU(81.0=31.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATGAGATCCTGGCAGCGAAC
R:
AAGGTAGCCACGACACATTGC
Band lengths:
222-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types