BtaINT0097129 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015988 | MYH11
Description
myosin-11 [Source:RefSeq peptide;Acc:NP_001095597]
Coordinates
chr25:14251630-14251988:-
Coord C1 exon
chr25:14251919-14251988
Coord A exon
chr25:14251791-14251918
Coord C2 exon
chr25:14251630-14251790
Length
128 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
3' ss Seq
TCCCCTCCTTCCTTCCGCAGATC
3' ss Score
14.7
Exon sequences
Seq C1 exon
GTACGAGATCCTGGCCGCCAACGCCATTCCCAAAGGCTTCATGGATGGGAAGCAGGCCTGCATCCTGATG
Seq A exon
GTGAGCCTGGTCCCCAGCCCCTCCCCAGAAATCCATTTGCAGACCTCCGGGACCCTCCTTAAACACACTTAACCCCCTGCCAAGTGGCAGAGCCAAGAACAGGAACTCTCCCCTCCTTCCTTCCGCAG
Seq C2 exon
ATCAAAGCCCTGGAACTCGACCCTAACTTGTACAGGATCGGGCAGAGCAAAATCTTCTTCCGAACCGGGGTCCTGGCCCACCTGGAAGAGGAGCGAGACCTAAAGATCACCGACGTCATCATGGCCTTCCAGGCGATGTGTCGCGGCTACCTGGCCAGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015988:ENSBTAT00000035455:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.4=100)
A:
NA
C2:
PF0006316=Myosin_head=PD(2.9=37.0),PF0061222=IQ=PU(81.0=31.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACGAGATCCTGGCCGCC
R:
CAGGTAGCCGCGACACATC
Band lengths:
222-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]