RnoINT0096351 @ rn6
Intron Retention
Gene
ENSRNOG00000057880 | Myh11
Description
myosin heavy chain 11 [Source:RGD Symbol;Acc:3136]
Coordinates
chr10:822281-822670:+
Coord C1 exon
chr10:822281-822350
Coord A exon
chr10:822351-822509
Coord C2 exon
chr10:822510-822670
Length
159 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
3' ss Seq
TCTTCTTCCTCTCTCCTCAGATC
3' ss Score
13.66
Exon sequences
Seq C1 exon
CTACGAGATCCTGGCAGCGAACGCCATCCCCAAAGGCTTCATGGACGGAAAGCAAGCCTGCATTCTCATG
Seq A exon
GTGAGCTTAAGCCTGAGCCCTCCCAAAGATCCAACTGTGACCTCCCTGCTGTAGATCATAGTGTCAGTTGCTGATCTGGGTGGGATGACTCTTAAATACATGTCACCACTGAGTAAATGGCCCAGTTGGAAATGGCAACTCTTCTTCCTCTCTCCTCAG
Seq C2 exon
ATCAAAGCCCTTGAACTTGACCCCAATCTGTACAGGATTGGGCAGAGCAAAATCTTCTTTCGTACGGGAGTCCTGGCCCACCTAGAGGAAGAACGAGACCTGAAGATTACTGATGTCATCATGGCTTTCCAGGCAATGTGTCGTGGCTACCTGGCCAGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000057880:ENSRNOT00000084608:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.4=100)
A:
NA
C2:
PF0006316=Myosin_head=PD(2.9=37.0),PF0061222=IQ=PU(81.0=31.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACGAGATCCTGGCAGCGAA
R:
CCAGGTAGCCACGACACATTG
Band lengths:
224-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]