GgaINT0015074 @ galGal3
Intron Retention
Gene
ENSGALG00000006520 | MYH11_CHICK
Description
NA
Coordinates
chr14:7634307-7635810:-
Coord C1 exon
chr14:7635604-7635810
Coord A exon
chr14:7634412-7635603
Coord C2 exon
chr14:7634307-7634411
Length
1192 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
TTCACTTTGGTCTCTCACAGATT
3' ss Score
10.28
Exon sequences
Seq C1 exon
GCTAAAGCGAACTTGGATAAGACCAAACAGACACTGGAGAAAGATAATGCTGATCTGGCTAATGAAATCAGGAGCCTGAGTCAGGCCAAACAAGACGTAGAGCACAAAAAGAAGAAGCTGGAAGTACAGCTGCAAGATTTACAGTCTAAATACAGTGATGGAGAGCGTGTTCGGACAGAACTCAATGAAAAAGTTCACAAACTACAG
Seq A exon
GTAAGAGGGATTGGGTTGAGCTTTTACTATGACATCTGGACTTGAGTAGACCAGTTAGACTAAGTTCATCTAGAGGTACATCTGGAGGAATCCTTGCCCTATTGACTTCAGTTGGAACGCTTTTTTTTTTTTCCCTTGGGGGGAATGGGGGGGGGGCAGGGAGGGATTTTTCAATTGTAAGGCTCCTATTTCAGTTATCACATCGTTAAATAATTATAACCACTCATGGAAGTGAGAGCTCTTAGTCTTAGGATTTCCTGTGCTGTGTAATGCCACCACTGTTTCAGTGACAGTGCTGCATATTTTACAAAGATCCTGTTCGTTTATTGCTGTGTGGTGGTGAATGTCAATAGAAATAAGGATTCTGGAAATGGATTAAACAGTATTAAACTCATAAGATGCATCCAGAAAAATGAAAACAGAAGTGGGATGCTTACTTACTTGTGATTTAGTTCCAAAACAGGGAATAACTAAAAATATTTTCAAGTAGCTCTTTGGTAGATTTGCAATGCCAAGCAATACTGATCAACCACAGTTAAAAGTTTGTTCATAGCAGCAGTAAGCTTCTCTCACTAATTTTAAGTTAACGGATATATAAGAAAATATAACTAAAATGTATCAGCTTCTCTCAAACTTGAGAAGAGAAAGGAAAATACAGCGAAATTCTTGTGCCCTTTTGCGATTCACTGGAAGGTGAAGAAAAAACAGGAGATGAATTTTCAGCATTTCTATTACTCACCTGAACAATAGTATTTTTCACAACTGAATTCCTAGAAAAGCTGTCTGTTATTGTGGTGTATACAATGTATTAGTATTGTCTTATGAATAGAATCTGGCAATGATATATAGCAATAAATGCTAAGGTAAACTCCAGACAAAAACAGCCCCTTGGAATCTTAATACATAGGTCACAAAGACAACATGCAGGCACTGTAGATTTTCTGTGGAGGATTCAATTTTGCAGAACTGAAACCCCACATACTGTCAAGAAGAATCGCTGCAATGTTTAGGATTCTCCTATGAACTACAGATAAGCAAGAAACACTTTTAGTACTCAAGATGACTCAAAAGCATAGCAGCATATTCAGAGCCCGTTCAAACATTAAGACCTCAGTCTAGAGCAAACTAAAGGTGGAGGAAGTTGTTGAAGTTGCACAAAATAACAGAGTGTTTTCACTTTGGTCTCTCACAG
Seq C2 exon
ATTGAGGTCGAAAATGTTACCAGTTTGCTCAACGAAGCAGAAAGCAAGAATATCAAATTAACTAAAGATGTGGCAACCTTAGGATCTCAGCTACAAGACACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006520:ENSGALT00000033605:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.710 A=NA C2=0.200
Domain overlap (PFAM):
C1:
PF0003816=Filament=PD(21.8=75.4),PF0157614=Myosin_tail_1=FE(7.9=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(4.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTAAAGCGAACTTGGATAAGACC
R:
TGTGTGTCTTGTAGCTGAGATCC
Band lengths:
311-1503
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]