HsaINT0107977 @ hg19
Intron Retention
Gene
ENSG00000100345 | MYH9
Description
myosin, heavy chain 9, non-muscle [Source:HGNC Symbol;Acc:7579]
Coordinates
chr22:36689805-36690344:-
Coord C1 exon
chr22:36690138-36690344
Coord A exon
chr22:36689910-36690137
Coord C2 exon
chr22:36689805-36689909
Length
228 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TGTCTCCCCGCCCGGTGCAGGTG
3' ss Score
9.31
Exon sequences
Seq C1 exon
GTGAAAGCAAACCTCGAGAAGGCAAAGCAGACTCTGGAGAACGAGCGGGGGGAGCTGGCCAACGAGGTGAAGGTGCTGCTGCAGGGCAAAGGGGACTCGGAGCACAAGCGCAAGAAAGTGGAGGCGCAGCTGCAGGAGCTGCAGGTCAAGTTCAACGAGGGAGAGCGCGTGCGCACAGAGCTGGCCGACAAGGTCACCAAGCTGCAG
Seq A exon
GTGAGGCCTCCGCCAGGACCCTGGCGCGGGCAGTGGGCCCTAGCAGCAGTTGTGGCCCAGGTCCCCAGGTGCATGTGTGCTCTCTGTCTCTCTCTCTTCTCAAACTGGCTCCTCAGACCCTCATGGTTCAGCTTGTGACTCAGGTCCAGCTTTACCTAAAGGAGATGAGGTGGGGCAGGAGCAGTGGGGGTGGGTCCATGGTCCTTTGTGTCTCCCCGCCCGGTGCAG
Seq C2 exon
GTGGAGCTGGACAACGTGACCGGGCTTCTCAGCCAGTCCGACAGCAAGTCCAGCAAGCTCACCAAGGACTTCTCCGCGCTGGAGTCCCAGCTGCAGGACACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000100345-MYH9:NM_002473:28
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.522 A=NA C2=0.486
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(7.9=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(4.0=100),PF045827=Reo_sigmaC=PU(0.7=2.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCAAAGCAGACTCTGGAGA
R:
CTGAGTGTCCTGCAGCTGG
Band lengths:
293-521
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)