GgaINT1018583 @ galGal4
Intron Retention
Gene
ENSGALG00000012533 | MYH9
Description
myosin-9 [Source:RefSeq peptide;Acc:NP_990808]
Coordinates
chr1:51655824-51656923:+
Coord C1 exon
chr1:51655824-51656030
Coord A exon
chr1:51656031-51656818
Coord C2 exon
chr1:51656819-51656923
Length
788 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TACTCTCATCTCTCCTTCAGGTT
3' ss Score
10.92
Exon sequences
Seq C1 exon
GTGAAAGCAAATCTTGAAAAGGCAAAACAAGCGCTGGAAAGTGAAAGGGCTGAACTGTCCAATGAAGTAAAGGTACTTCTGCAAGGCAAAGGGGATGCAGAGCACAAGAGGAAAAAAGTAGATGCTCAGCTCCAAGAACTGCAGGTGAAGTTTACAGAAGGTGAAAGAGTGAAGACAGAATTGGCTGAGAGGGTGAACAAGTTGCAG
Seq A exon
GTGAGTGGCACGGGTTTTCCTTAGCTTCTGTTGTAGCCAAGGAATAGAGAGTAAAGGAGGTTATAGGGTGGTACCTTCCTATGGTTAATTTGAAAATCTCTTGTTCCTCCAGGGGATAAAGCTCCTGCGAAAAAGCACAGACATAGTTTGCTTCCCAAGGACTCAGCAAACTCCTTAACTCATTATCAGTTCAGGCCATTAGGACTGATGTCATTAATGAGCAGCCCCAAAAAGGTGCTTCCCTTCAGTGTGCAGCAGTTTGTACTGTACAGTTCTGTAACCTGTCAGCTACTTGTGAGCCTACAGTGGCATAGTCTGGTGATTTGGAAGAAAGTATCTTGATAGTTTGTAATGTGGTTGATGGTGAAGAGGAGCAGCTAAAGGGAGATGCTGAAATTCAGGATTTTCTCCAACTCTCTTCAAAATAAACAAGAAATACCTTTGGTTCGCACCAAGCATTGTCTTTTTGGAGTGTTAACATTAGATGTTTAGCATTGCTGGTGTATGCATACTTTTCTGGAGTCTGAAAATGTAGTTTGGAGTATCTACATGCAGTCTTGAAGCATATCATATATGATAAAGAGATTTAAAGACGGAAGGATGTAGCAATAAAATCTCTTTTGAATTCTTCATGTTTCATCCCTAGCTATCTAGAAATGACACATTTCTTCTCCAAGGACATGATATGCATGCCTTACTTTTGAGAAGTGTCTTCCAGGTCTTGCAGCCGTTCCTGGCTTTGCTCTTGCTGATGCACTTAATAAGTGATACTCTCATCTCTCCTTCAG
Seq C2 exon
GTTGAGCTGGACAATGTCACAGGCCTTTTGAACCAGTCTGACAGCAAATCAATCAAATTAGCAAAGGACTTCTCTGCTCTGGAGTCACAGCTTCAGGATACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012533:ENSGALT00000020472:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.391 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(7.9=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(4.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAAAGCAAATCTTGAAAAGGCA
R:
GAGTATCCTGAAGCTGTGACTCC
Band lengths:
310-1098
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]