BtaINT0097410 @ bosTau6
Intron Retention
Gene
ENSBTAG00000010402 | MYH9
Description
Bos taurus myosin, heavy chain 9, non-muscle (MYH9), mRNA. [Source:RefSeq mRNA;Acc:NM_001192762]
Coordinates
chr5:75103924-75104440:-
Coord C1 exon
chr5:75104234-75104440
Coord A exon
chr5:75104029-75104233
Coord C2 exon
chr5:75103924-75104028
Length
205 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TTGTCTCCGTCCACACACAGGTC
3' ss Score
8.72
Exon sequences
Seq C1 exon
GTGAAAGCCAACCTCGAGAAGGCCAAGCAGACCCTGGAGAACGAGCGAGGGGAGCTGGCCAACGAGGTGAAGGTGCTGCAGCAGGGCAAGGCGGACACCGAGCACAAGCGCAAGAAGGTGGAGGCCCAGCTGCAGGAGCTGCAGGTGAAGTTCACCGAGGGAGAGCGTGTGCGCACAGAGCTTGCCGACAAGGTCTCCAAGCTGCAG
Seq A exon
GTGAGGCTCCCGCCGGACTGCCTGGGTCCTAGCCATGCTGCCAGGGCCCCTGGTCTTTTCTCTCTCTCTCTCTCCATGACCCGGCCCATCTGTGAGCCCCCCGGGGTTCAGCCCGTGGCTCAGGTCCAGCATGGCTGAGAGAGCCGAGGTGGGCCCCGAGCAAGCCTGGTCAAGCTCACGGGGCTTTGTCTCCGTCCACACACAG
Seq C2 exon
GTCGAGCTGGACAATGTGACAGGTCTTCTCACTCAGTCGGACAGCAAGTCTAGCAAGCTCACCAAGGACTTCTCTGCTCTGGAGTCACAGCTGCAGGACACGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010402:ENSBTAT00000013737:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.580 A=NA C2=0.600
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(7.9=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(4.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGAGAAGGCCAAGCAGAC
R:
GTGTCCTGCAGCTGTGACTC
Band lengths:
296-501
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]