HsaINT0107977 @ hg38
Intron Retention
Gene
ENSG00000100345 | MYH9
Description
myosin heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:7579]
Coordinates
chr22:36293759-36294298:-
Coord C1 exon
chr22:36294092-36294298
Coord A exon
chr22:36293864-36294091
Coord C2 exon
chr22:36293759-36293863
Length
228 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TGTCTCCCCGCCCGGTGCAGGTG
3' ss Score
9.31
Exon sequences
Seq C1 exon
GTGAAAGCAAACCTCGAGAAGGCAAAGCAGACTCTGGAGAACGAGCGGGGGGAGCTGGCCAACGAGGTGAAGGTGCTGCTGCAGGGCAAAGGGGACTCGGAGCACAAGCGCAAGAAAGTGGAGGCGCAGCTGCAGGAGCTGCAGGTCAAGTTCAACGAGGGAGAGCGCGTGCGCACAGAGCTGGCCGACAAGGTCACCAAGCTGCAG
Seq A exon
GTGAGGCCTCCGCCAGGACCCTGGCGCGGGCAGTGGGCCCTAGCAGCAGTTGTGGCCCAGGTCCCCAGGTGCATGTGTGCTCTCTGTCTCTCTCTCTTCTCAAACTGGCTCCTCAGACCCTCATGGTTCAGCTTGTGACTCAGGTCCAGCTTTACCTAAAGGAGATGAGGTGGGGCAGGAGCAGTGGGGGTGGGTCCATGGTCCTTTGTGTCTCCCCGCCCGGTGCAG
Seq C2 exon
GTGGAGCTGGACAACGTGACCGGGCTTCTCAGCCAGTCCGACAGCAAGTCCAGCAAGCTCACCAAGGACTTCTCCGCGCTGGAGTCCCAGCTGCAGGACACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000100345:ENST00000216181:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.522 A=NA C2=0.486
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(7.9=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(4.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCAAAGCAGACTCTGGAGA
R:
CTGAGTGTCCTGCAGCTGG
Band lengths:
293-521
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development