DreINT0099740 @ danRer10
Intron Retention
Gene
ENSDARG00000000103 | myh10
Description
myosin, heavy chain 10, non-muscle [Source:ZFIN;Acc:ZDB-GENE-030616-162]
Coordinates
chr6:7479841-7481159:+
Coord C1 exon
chr6:7479841-7480047
Coord A exon
chr6:7480048-7481054
Coord C2 exon
chr6:7481055-7481159
Length
1007 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
3' ss Seq
ATGCTTATCATATGTTGCAGACG
3' ss Score
6.88
Exon sequences
Seq C1 exon
GTCAAAGGAAATCTGGAGAAAAACAAACAGACTCTGGAGAGCGATAATAAGGAGCTGACCAATGAGGTGAAGAGTTTGCAGCAGGCCAAGTCTGAGTCCGAACACAAGAGAAAGAAACTGGAGGCTCAGCTGCAGGAGGTCATGGCCCGCTTCAGTGAGGGGGAGAAGGTTAAAGGAGAGCTGGCCGACCGTACCCACAAGATACAG
Seq A exon
GTCAGTGCTTTTACAGAAACCACATGTGAGGGATGTTAATCTTTCTGTCATATGATGAGCACTCAGAAACGCTTCTGTCTTCACATCAATCCATCAAAATAAAGTTTTTTAGATATTAGCATCAGTATTGCTTTTTTAAAGATATCTATAAGCTAGTGTGCTCCAAAACAGTGACAAAATTTATGTTTAGAAGATGTAAAACTGATATAAACATGTAAAGCTTGTAGTTTGTCACTTCCACCTAAATGGATCAATGGTTTAATTCAAGTCAACCCATACTAGTTTCTCATAACGTCATAACCAACTAAATGCTCTATCTGACATGCCCCGCCCCACTCAAGACGACCACTATTTAGAGAGCTATGAAAAAGCAAAATCATATTGGCTCTTTTTTAAGGGGAGGAGCTACACTGTCCCGCCCTCTTTTAGTGTTTCATTTAAGATTGTGTCAAATATTGAATCAAAATGCACAATTCAAAGCACTTCACGGGACCTTTAGATTAAACATTGTGACAGAAATATAGGCCTATTCATTTTACATGAGATAATACTTTCCAATGTAAAATAAAAAGGATGCATTTACTAAAATTCATCAGTAAGTAGCAGAAATAAAATGTTGTTTAAAAGTATTTTTTTATATTTAAATATGATTATAATTTAAAAATGATTTAATGTATACATTTTATTTTTAAGTTTATTTGACTTTGTAAATACAATTTTGTTAAATTACTATAGCTAAAATGGGGGGGGGGGGGGAAATTAAATGGAACTTATGGGCAAAGGATTAACTTTTTTAAGATTAGACTTTTGCAGATGCGCACATTGCGATATCAATGCTAAAACGATATATTGTTCAGCCCTAATGCATTTCTTGAGTCACCAATTGCTTATATAGACTCATTTTCATTTTGTTCCTGTATATTTTTTTAATCATTTGCAAACTTAAATCCAGAGTACTTGTGAAATATCCTCCCACCACAGAGTTTAATGCTTATCATATGTTGCAG
Seq C2 exon
ACGGAACTGGACAATGTTTCATGCCTTTTAGAAGATGCCGAGAAGAAGGGAATCAAACTGACCAAAGACGTCTCCAGTCTAGAGAGTCAGCTTCAGGATACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000000103:ENSDART00000151114:30
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.957 A=NA C2=0.429
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(7.9=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(4.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAAAGGAAATCTGGAGAAAAACA
R:
TGAGTATCCTGAAGCTGACTCTCT
Band lengths:
311-1318
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]