RnoINT0096322 @ rn6
Intron Retention
Gene
ENSRNOG00000002886 | Myh10
Description
myosin heavy chain 10 [Source:RGD Symbol;Acc:71000]
Coordinates
chr10:55389506-55392134:+
Coord C1 exon
chr10:55389506-55389712
Coord A exon
chr10:55389713-55392029
Coord C2 exon
chr10:55392030-55392134
Length
2317 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGG
5' ss Score
9.99
3' ss Seq
TCTTCCTTACCTCCTTGCAGAAT
3' ss Score
10.73
Exon sequences
Seq C1 exon
TTCAAAGCCAATCTGGAGAAGAACAAACAGGGCCTGGAGACGGACAACAAGGAGCTGGCGTGTGAGGTGAAGGTGCTGCAGCAAGTCAAGGCTGAGTCAGAGCACAAGAGGAAGAAGCTCGATGCCCAGGTCCAGGAGCTCCACGCCAAGGTGTCAGAAGGTGACAGGCTCAGGGTAGAACTGGCCGAGAAAGCAAACAAGCTACAG
Seq A exon
GTATGGGCTCTGGCGTGTTCTCTTGCATACCTGGAAAGTGTCTCAATTAAATCTGGGGAACCCTTAAGTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAGTTAAGCAATCCCTTTAAAGAATAAGACATGTGAGTTTAGGGCTGGAGAGATGGCTCAGTGGTTAAGAGCACTGACTGTTCTTCTAGAGGTCCTGAGTTCAAATCCCAGCAACCACAAGGTGGCTCACAACCATCTGTAATGGGATCTGCTGCCCTCTTCTGGTGTGTCTGAAGTCGGCTACAGTGTACTCATATAAATAAAATAAATACATCTTTTTTTAAAAAAAGACGTGTGAGTTTAGACCTAGCCAGCGTGGCTGTAGCTGAGTGCGTCTCACCTTCTCCGTTAGTCCAGCTGCACACAGAAGTCTTTAGAGTATTACAGTGGCACAGGCTCAGCGTTAAAGCTGCTCACTGTAGGAATATGTGCAAAGGCGCCTTCATGCCTAGTAACAGACTCCGGCACAGCAGTAAGGTGACTTCCCAGAGGAGTCACTGTTAGGAAAGAGGTGTTTGTGCCACTGCCTCGCTGCACAGAGTACAGAAGTGGTTGTCACAGAGGTTTGAGGTCTCCTGTTCTAGGGAAGGAAGCTGGAGCTGCCTGACTCTGGTGGCCAGCTGGGGAACCTCCAGCCCAGTCCCACAGCGTGTGCCCAGTTTCTTCAGCAGGGTGGGGACAGTGGTGGCAGTCGCCCTTCAGGGATCCTATCATTCACTCAGCATAGTAGGCTGTTTGTTGCTGAGAAGTGGGTGCTGTGGGTCGTGTAGGCCGTCAGCCTGGAAGGACAGGTGGCAGGTGCTCTGAGCACAGGCACAGTGGACCTAGTGTCAGACCCCACCTCAAATCCAACTTTCCGGATCTAGCCAGGGATGTCAGAAGCAGGCCTCTTAAGGAGACCAGCCTTTGGCCTGTGTACAGAACATCCCTGTGTGCCTCGTGTGTGGGCTCTCAGGGATCTTGGAAGGTATTCCTTAAAGGCAGCAGTTAGAAACAAGTGTTCTGAACAAGGTGAGGGACATCAGAGGGTTCCTGGGAAGCACTGGGCTCCTGTGTACATAGCCACTACCCCCACTCTCATCCTCCATAGGGCGGCAAGAAGGCTGTGGCTCATAGAACCTAAGCCACCTCTCTGTCCTCTTCAGATCTCAGGTAGAAGAGGAGGTCCCTCTCAACACCAGAGATCTTCCCCAGTCCCCTGCACCCAGAGCACTGAAGGATGTTGCTACAGAAGTAATAGAAACAAGGCTATCCTGTTAGGCATACAATGTATCTTCCATATCGCTCCCCATAGTCATACAGCCAGAAGACAAGTGAAGACAACCTGCCCTGCTGTTCCTCCACTTTCTATCTACATGCACAACACTCATTAAAATGTGAGCGTGCATGTTTTGAGACAGGGTTTGTCTGTGTAGCTGTGGCTGTCCTTGAACTTGCTTCTTGACCAGAATGACCTCTCACAGAGATCCACCTGCCTCTGCCTCCCTGGTATTAAAGGTGTGCGCCACCACTGCACAGTCTCACGAGTTTTGTCCACATGTTTGTCTGTGCATCACCTCTATGCTCGATACGCACCAAGGTCAGAAGAGGGTGCAGATCCCTAGGGTGGGAGTTACAGACCACTATGAGCTTGGTGCTGGGAACTGAACCTAGACCTTCCAGAAGTGCAGCCAGTGCTCTTATGGTCTGAGCCATCTCTCCAGCCCTGTTTGGAGACCTCTCTCATTGGGGAGGAGATGAAGGGGGAGGTGTCACACTATTCCTAAAATCTGATCCTCAGCGACTTATGCTCACACTGAATGTGAGTATGCCACTCCTCACAGCTGCAGACATTTTGGCTGATTACCAGCATGTACATATCTCCTTGAGTCCCTTAAATGTCAAGTTCTGTAAGGATGTAAACTCCATGTGCCCCCGGCATGTGCTTAGTGCAAATTAACATGGAGGAAACCACCTGCTGGCCCAAACTGGCCCTTCCCGCCCTCCAGCGTGGTTTTGTTTTGTCTTTTTGTGGTGGTCAAAGTAAAACACGAAGAGGATCACAGGTCCCTGCGCTCCCTGCCCTTTCAACCAGAGGCCGTGGGAAGGGGGCTGTGGAGTGGGTTTTAGCTCCGGCTGGGTGGTAAGCATTCACTGAATTTATTTTCTAGTTCGAATTCTCATACATGTGCACACTCACGTGCTGCTGTGTTCTCTAAGGGCTCTGATGGTCTTTTCTTACTGTGGAACCGAGTTTCTTCCTTACCTCCTTGCAG
Seq C2 exon
AATGAGCTGGATAATGTCTCAACCCTGCTGGAAGAAGCCGAGAAGAAAGGAATGAAGTTCGCTAAGGACGCCGCAGGTCTCGAGTCTCAGCTACAGGACACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002886:ENSRNOT00000065895:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.609 A=NA C2=0.743
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(7.9=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(4.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]