BtaINT0097098 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021151 | MYH10
Description
Bos taurus myosin, heavy chain 10, non-muscle (MYH10), mRNA. [Source:RefSeq mRNA;Acc:NM_174834]
Coordinates
chr19:28696960-28697679:-
Coord C1 exon
chr19:28697473-28697679
Coord A exon
chr19:28697065-28697472
Coord C2 exon
chr19:28696960-28697064
Length
408 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
3' ss Seq
TCTTTTATTCCTCCTTGCAGAAT
3' ss Score
11.88
Exon sequences
Seq C1 exon
TTCAAAGCAAATCTGGAAAAGAACAAGCAGGGCCTGGAGACAGACAACAAGGAGCTGGCGTGCGAGGTCAAGGTGCTGCAGCAGGTCAAGGCTGAGTCCGAGCACAAGAGGAAGAAGCTGGACGCCCAGGTCCAGGAGCTCCACGCCAAGGTCTCAGAGGGAGACAGACTCAGGGTGGAGCTGGCAGAGAAAGCCAATAAGTTACAG
Seq A exon
GTAGGCCTGGGAAACCATTCCCAGACGTCACCCTCAGTGTCGGGCAGGGACTGACATTCAGGGGCACACAGGCAGCCCCCAGCACACATTAGGCTCCTTGTGTTGGTTCTCCCACTTAAAGCTCACATCACCCCCAGATGAGTCTGGTAGATGAGGACGTGACTAGCTCGACTGCCTCTGGGACTCAGCTGGCAGTTCTCAGGGGTAGAGCTGCAGACAGGCAGCCCAGAGCCTTCCCCACCCTCTGTGGCCAAGACTGCTGCATCTTCCATGTGCCGTCCCTTTGCTCACGTGATTGTGGACACTATTGGGTTGGTCAAAAAGATGCAGTTTTTCCATAACAGAATCACCACTCTTTTCTATCTGACCACTGTTGAAGGGAGTCTGATCTTTTATTCCTCCTTGCAG
Seq C2 exon
AATGAATTGGATAATGTCTCAACTCTTCTAGAAGAAGCAGAGAAGAAGGGTATTAAATTTGCTAAGGATGCAGCTGGTCTGGAGTCTCAGCTCCAAGACACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021151:ENSBTAT00000028188:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.522 A=NA C2=0.343
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(7.9=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(4.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAAGCAAATCTGGAAAAGAACAAGC
R:
CTGTGTGTCTTGGAGCTGAGAC
Band lengths:
310-718
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development