GgaINT0015076 @ galGal3
Intron Retention
Gene
ENSGALG00000006520 | MYH11_CHICK
Description
NA
Coordinates
chr14:7633453-7634205:-
Coord C1 exon
chr14:7634053-7634205
Coord A exon
chr14:7633702-7634052
Coord C2 exon
chr14:7633453-7633701
Length
351 bp
Sequences
Splice sites
5' ss Seq
CAGGTATCA
5' ss Score
7.33
3' ss Seq
TCTCTGAATTCAAATTTCAGCTC
3' ss Score
6.8
Exon sequences
Seq C1 exon
GAGCTGCTTCAGGAAGAAACACGGCAGAAGTTGAATGTGACTACAAAGCTTCGTCAGTTAGAGGATGATAAGAACAGCTTGCAGGAGCAGTTGGATGAAGAAGTAGAAGCAAAACAAAATCTGGAGAGACATATTTCTACACTGACAATACAG
Seq A exon
GTATCAGCGCCATACCTAAATCATTAACTCTATCACCAAGTTTTGTCAGTAGTTCCAGAGGCTTCAGACAGGCAGAACAATCCTAGAACAATATACTGATCTTCAGGAACTCGTGTTGTTAGCCCAGATGGCATTAAGGGAGACAGAAGACATCTAGTATCTTTAGCATAAGCATATATTAAAGAGGTCCCAAGGCAGTTTTTCATACTTGGCCTGTACTAGTGCATACTAGGCAGGTAGTCTGCCATGTCAAATTAGAGGTTTTGTGGTCTTAGTTTTCTCCTAGTCCCCTTCTATGCCAAGCTTTGTAGTCACTGATATAAAGATTTCTTCTCTGAATTCAAATTTCAG
Seq C2 exon
CTCTCCGACTCTAAGAAGAAGCTACAAGAATTTACTGCTACAGTAGAAACTATGGAAGAAGGTAAAAAGAAACTGCAGAGGGAAATTGAAAGTCTCACACAACAGTTTGAGGAAAAAGCTGCTTCTTATGACAAACTGGAAAAAACCAAGAACAGACTCCAGCAGGAACTGGATGACCTAGTGGTGGACTTAGATAACCAGCGTCAGCTGGTCTCCAACCTGGAGAAGAAGCAGAAGAAGTTTGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006520:ENSGALT00000033605:31
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.686 A=NA C2=0.446
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(5.8=100),PF045827=Reo_sigmaC=PU(32.1=88.2)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(9.6=100),PF045827=Reo_sigmaC=FE(58.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTCAGGAAGAAACACGGCA
R:
CGCTGGTTATCTAAGTCCACCAC
Band lengths:
351-702
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]