MmuINT0103277 @ mm10
Intron Retention
Gene
ENSMUSG00000018830 | Myh11
Description
myosin, heavy polypeptide 11, smooth muscle [Source:MGI Symbol;Acc:MGI:102643]
Coordinates
chr16:14207540-14208141:-
Coord C1 exon
chr16:14207989-14208141
Coord A exon
chr16:14207789-14207988
Coord C2 exon
chr16:14207540-14207788
Length
200 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGC
5' ss Score
6.46
3' ss Seq
GCCACTCTTGGCCATTCCAGCTC
3' ss Score
5.38
Exon sequences
Seq C1 exon
GAGCTGCTCCAAGAAGAAACCCGGCAGAAGCTCAATGTGTCTACCAAGCTGCGTCAGTTGGAAGATGAAAGGAACAGCCTGCAGGACCAGCTGGATGAGGAGATGGAGGCTAAGCAAAACCTGGAGCGCCATGTCTCAACACTGAACATTCAG
Seq A exon
GTGTGCCAGCATGCTGGGGTCCACAGTGGGTCCTCTCCTCACCTCCAGGGTCCATTGGGACTCCTCTTTTCTCTGGGGTCCCCATGGGTCTCCTCTGGGCCGGTGTGGTTTATTTGTTCAGTAGCTCCCTCAACTGTTGGATTTCCTCAGTGAGGAGGAAAAGAGTTCACGTCTCAGGTTGCCACTCTTGGCCATTCCAG
Seq C2 exon
CTCTCAGACTCTAAGAAGAAGCTGCAGGACTTTGCAAGTACCATCGAGGTCATGGAGGAGGGGAAGAAGAGGTTACAGAAAGAGATGGAGGGCCTCAGCCAGCAGTATGAGGAGAAGGCGGCTGCCTATGACAAACTGGAGAAAACCAAGAACAGGCTCCAGCAGGAGCTGGATGACCTGGTCGTGGACTTGGACAACCAGCGGCAACTGGTATCCAATCTGGAAAAGAAGCAGAAGAAATTTGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000018830:ENSMUST00000090287:30
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.863 A=NA C2=0.458
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(5.8=100),PF045827=Reo_sigmaC=PU(31.9=86.3)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(9.6=100),PF045827=Reo_sigmaC=FE(59.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCAGAAGCTCAATGTGTCT
R:
GCTGGAGCCTGTTCTTGGTTT
Band lengths:
295-495
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types