GgaINT0015080 @ galGal3
Intron Retention
Gene
ENSGALG00000006520 | MYH11_CHICK
Description
NA
Coordinates
chr14:7630450-7631490:-
Coord C1 exon
chr14:7631329-7631490
Coord A exon
chr14:7630579-7631328
Coord C2 exon
chr14:7630450-7630578
Length
750 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
3' ss Seq
CCACTGTTCTTTTCAACAAGGCT
3' ss Score
5.09
Exon sequences
Seq C1 exon
CTCCATGAACATGAAACGGAACTGGAAGATGAGCGGAAGCAACGTGCCCTGGCAGCTGCAGCCAAAAAGAAGTTGGAGGTTGATGTCAAAGATCTAGAAAGCCAAGTCGATTCTGCTAACAAAGCTCGGGAAGAAGCCATCAAACAACTTCGCAAACTACAG
Seq A exon
GTAGGTAAAACCCACAAATTCAGTTTTTTCTATTGCTGTCTTTTGTACAGACATAGCATGAAAGTTTGGTAACAACCATAAATTAAATACCCAATACAGACTGTATGTTGCAGGTCCAAGGAAAGCCTTTAAGAAACCCACCAGAACCAAGTATCTGTACTGTAATGCTTAATGTGAATGATGAAGGAAAATTCCATATGAATAACCATGAAAACCTTAAATGTCATTATTGCAGAGAGCTTCCAACATTCTCTACCTGACATCTATCTGCTGTTTACTCAACCACATGAAGGAAAACAGATTCCACTGTAGAGAAAGGGCTACAAGATAAAACTGACTATAAGACATCAATCCTGTTCTAACAATGACTCAGAAGCATAAAAGATTCCTCAGAAGTCATACTGTTTCTAAATTACCATCTTCTTATTTATAGATCTACTCTTCTATCATATGCTGACAGATAAACAAGGAATTGGACATATTCACAAAGATTAAGATGGCACACGCACAAACAGGCAAGGGAAATAAGGTCAATAGGCATTACAAAAGCCACAGTGCGCAAGTGGTAGCATCACTGTTCTTGGAATAATATTTAAGAGTCTTCCAACATACACTAGCTGATCTCTACAGAAGATACACATGGGCTTTATGATTACATAAATGCTTGTGTTCTATTATGTGCATATTTCTTTACACTGAAATTGTAGTAAAACTAGACAAAAATAAACTTCCACTGTTCTTTTCAACAAG
Seq C2 exon
GCTCAGATGAAGGACTATCAACGAGACCTGGATGATGCACGGGCTGCCAGAGAAGAAATATTTGCAACAGCCAGAGAAAATGAGAAGAAAGCCAAGAACCTTGAAGCTGAACTCATCCAGCTTCAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006520:ENSGALT00000033605:35
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.796 A=NA C2=0.837
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(6.2=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(4.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATGAACATGAAACGGAACTGG
R:
TTGAAGCTGGATGAGTTCAGCT
Band lengths:
286-1036
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]