MmuINT0103281 @ mm9
Intron Retention
Gene
ENSMUSG00000018830 | Myh11
Description
myosin, heavy polypeptide 11, smooth muscle [Source:MGI Symbol;Acc:MGI:102643]
Coordinates
chr16:14204724-14205361:-
Coord C1 exon
chr16:14205200-14205361
Coord A exon
chr16:14204853-14205199
Coord C2 exon
chr16:14204724-14204852
Length
347 bp
Sequences
Splice sites
5' ss Seq
CAGGTTGGT
5' ss Score
8.08
3' ss Seq
AGTGGACCTTGCTTGTGCAGGCT
3' ss Score
6.05
Exon sequences
Seq C1 exon
CTGCACGAGTATGAGACAGAACTGGAAGATGAACGGAAGCAGAGAGCTCTGGCGGCGGCAGCTAAGAAGAAGCTGGAAGGGGACCTAAAAGACCTAGAGCTCCAGGCTGACTCAGCCATCAAAGGGAGGGAGGAAGCCATCAAGCAGCTTCGAAAACTGCAG
Seq A exon
GTTGGTGATGCTGTATTGAGGGAGGAGGGGATGCAGTTGGAGGAAGAGGCAGCTCCCCAGCCTGGTGCATCAGTGTAGAGACTTCAGGAAGCAACCTGCTTCTATCAGAGGTGTAGGTTAGCGGCTGACTCTGTGTCGGTATTTAGCTACAGGTGGTTGGTTTTCTGAGTGGGGCACTGTTGCTGGGCTCTTGTTCACTCCCTTCAGTTAACATGGAGTATTCTGCCACTGGAGACCTGGGGCCCAGCCAAGTACCAGGGATTCACCAAGATAAACTGGAAATTCCAAGGGGTTGGTAAGTCTCTCTGTGCAGAGCCAGGTGAGTAAAGTGGACCTTGCTTGTGCAG
Seq C2 exon
GCTCAGATGAAGGACTTCCAAAGAGAGCTGGATGATGCCCGTGCCTCCAGGGATGAGATCTTTGCCACCTCAAAAGAGAATGAGAAGAAAGCCAAGAGTCTGGAGGCAGACCTCATGCAGCTCCAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000018830-Myh11:NM_013607:34
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.481 A=NA C2=0.791
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(6.2=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(4.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACGAGTATGAGACAGAACTGG
R:
CTTGGAGCTGCATGAGGTCTG
Band lengths:
287-634
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: