RnoINT0096369 @ rn6
Intron Retention
Gene
ENSRNOG00000057880 | Myh11
Description
myosin heavy chain 11 [Source:RGD Symbol;Acc:3136]
Coordinates
chr10:849266-849928:+
Coord C1 exon
chr10:849266-849427
Coord A exon
chr10:849428-849799
Coord C2 exon
chr10:849800-849928
Length
372 bp
Sequences
Splice sites
5' ss Seq
CAGGTTGGT
5' ss Score
8.08
3' ss Seq
TGTCCTATTGACTCATGCAGGCT
3' ss Score
6.78
Exon sequences
Seq C1 exon
CTGCATGAGTATGAGACAGAACTGGAAGATGAACGGAAGCAAAGGGCTCTGGCGGCAGCAGCCAAGAAGAAGCTGGAAGGGGATCTGAAAGACCTGGAACTCCAGGCTGACTCAGCCGTCAAAGGGAGGGAGGAAGCCATCAAGCAGCTTCGAAAACTGCAG
Seq A exon
GTTGGTGATGCTTGTGTTGAGAAAGGAGGGAATGCAGGGGACGGGGAAAGGCAGCTCCCCAGGCCTAGTGCAGCATCAGCATGGAGACTTCAGGAAACAACCCACCTCTGTCAGAGGTGTAGGTCTGCGGCAGACTCTGCCACTGTTTAGCCACAGGTGGTTGGTTTTCTGAGTGAGGTACTGTTGCTGGGCTCTTGTTCACTCCCCTCAGTTCACATGGAGGATTCTGCCACTGGAGCCCTGGGGCCCAGCCTAGTACCAGGGATTCACCAAGAAAATTGGAATTCCAAGGGGGTGGTATGCAGAGGTAAGTCTCCCTGTGCAGAGCCAGGTGAGGAAAGTGGACTTTGCTTGTCCTATTGACTCATGCAG
Seq C2 exon
GCTCAGATGAAGGACTTCCAAAGAGAGCTGGATGATGCCCGTGCCTCCAGAGATGAGATCTTTGCCACCTCAAAAGAGAATGAGAAGAAAGCCAAGAGTCTGGAGGCAGAGCTCATGCAGCTCCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000057880:ENSRNOT00000084608:34
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.556 A=NA C2=0.814
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(6.2=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(4.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCATGAGTATGAGACAGAACTGG
R:
CTCCTGGAGCTGCATGAG
Band lengths:
290-662
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]