GgaINT0015365 @ galGal3
Intron Retention
Description
NA
Coordinates
chr14:15228784-15230036:-
Coord C1 exon
chr14:15229845-15230036
Coord A exon
chr14:15228995-15229844
Coord C2 exon
chr14:15228784-15228994
Length
850 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
3' ss Seq
GGAATCCTTGTGGTTTTTAGGCT
3' ss Score
5.91
Exon sequences
Seq C1 exon
ATTTGTAAATTACGGACTCTAAAATCGTTGTGGACTCTGAAGCCTCCTTGTAGGACTTTCCATGGGCATCCCAGGCTGCTTGTCTCTGATGTGCACTCTCAGTACGAGTCTGTCAGACGTGGTGAACAGGAAATACCAAAGTACTTTAACTTTGCAAGTGATGTACTGGACAAATGGTCTGAGATTGAAAAG
Seq A exon
GTAGGTGATCTTTTGGGCAGATGAGATTCTTTAATTCATTTAAAAGAGTAAATTCTCTTTATTAAAAAAATAATCCGTTGCTAAAAAACAATTTGAACCAGGAAATGATGTGGAATCTCATTTCTTCTTGCTTCATTTTTTGTAAGTGTCTCTGACCCTTGGTGCTCCCTGTGTAGGTGGAAAAAGCAATGATAAGACCCTCATGACCCTGATTTATCATTGGAATGGTTGTGCTTATTTCTTCTGCATGCCATGTCACATCATAAAACAAGAGTAGCATAACAATAGTATTGCATGCCAGGGAACTTTCTTTCACAAGCGTGTAACTGCCTTACTTCAATGTAGATGCTGTATTTGTCCAGATGTCATGTTGCTAAAGACTTCTTGCTTTGTTCACTCCCCTCTCCCTGAGCTCTCAGGCTTGTCCAGGGATACTGCATTGTCATGCTTTATTTCCTCCTCTGCCTGGACAGCTTCAGTTTGTTAGTATTCCACAACTCCATTCAGAATATCACAAGTATTAGGTGAAGTATTTCATGTTACCCATTACCTTCTTAAGAGCATTAATGCTCAGTGTGAAGCTTAAACAGGAATAGAATTCAGACAATGACTTGAGTCTGGAGATGCACAGAATGGTGGACACCTCAGGTTCAGAAAAGGACAGTTTGTTAGGAATGTCTGAGTGTGATCCATAGTGAGTCTTGCACTCCCTAGGACAAAGGAAAATAATGGCTCATATGCAAGTTTGGAAACACCTGAATCCTCCACGATTCACAGATACTTGTGCTTTTATAATTATGCAGTATTTCAGAATAGATTGGGGTTTCTTTGGAATCCTTGTGGTTTTTAG
Seq C2 exon
GCTGGAAAAAGACCAACAAACTCTGCTTTTTGGTGGATAAGTGGAAATGGAGAAGAAGTAAAGTGGAGCTTTGAGGAGCTGGGATTCCTTTCTCGGAAAGTAGCCAACGTGTTGACCAAAGTGTGTGGACTGCAAAAAGGGGACAGAGTCATTCTGGTCCTGCCGCGAATCCCGGAATGGTGGCTGGTGAACGTGGCTTGCATTCGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000018875:ENSGALT00000003038:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=PU(0.5=3.1)
A:
NA
C2:
PF0050123=AMP-binding=FE(16.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTTGTGGACTCTGAAGCCTC
R:
CAGCCACCATTCCGGGATTC
Band lengths:
353-1203
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]