HsaINT1002679 @ hg38
Intron Retention
Gene
ENSG00000183549 | ACSM5
Description
acyl-CoA synthetase medium-chain family member 5 [Source:HGNC Symbol;Acc:HGNC:26060]
Coordinates
chr16:20411470-20418269:+
Coord C1 exon
chr16:20411470-20411688
Coord A exon
chr16:20411689-20418058
Coord C2 exon
chr16:20418059-20418269
Length
6370 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAAG
5' ss Score
4.41
3' ss Seq
CTGCCTGTACCACCATCTAGGCT
3' ss Score
5.82
Exon sequences
Seq C1 exon
ACAGGAGGCGACTGCATGAGACCATGGCTGAGACACCTAGTCCTCCAGGCACTGAGGAACTCCAGGGCATTCTGTGGGTCTCATGGGAAGCCAGCACCTCTACCTGTTCCTCAGAAGATCGTGGCCACCTGGGAAGCCATCAGCCTGGGAAGGCAGCTGGTGCCTGAGTACTTCAACTTCGCCCATGATGTGCTGGATGTGTGGAGTCGGCTGGAAGAG
Seq A exon
GTGAAGCCTGTTCTGTCCTAGAGTCCATCTGGGGCATCTGAGGCTGCCCTCATGTACCACAATGAGACTCAAGGCTCCAAGCATGTTGATGAGGAAATTTGGACCTGGGAATTTTGCTAGTTCTAAAATGTAAACTGTTGGCATTTGAGACTTAGGAAAAAATTCTGAGTCAGTGTTGTGAGCCTTAGACATGCTTGTTCCTTCTCTGAAGTGTCCTGCATTCTTGAGCCCAAATCACACAGTGAGACAGTTATGTCCCTTCCGATTCCCTTCCAGTTGTTCATCAACTGAAGGAGGAAGTTTTGTTTTGCTGCTACTCTGTCTTTGATGTTTTTCTCTCACTGTCACGCCCTTCTCTTCTAAATAAGGAAAGAAGGCCGGGCGCGGTGGCTCATGACCATAATCCCAGCACTTTGGGACACCGAGAAGGGCAGATCACCTGAGGTCAGGAGTTCGAGACCACCCTCACCAACATGGTGAAACTCCGTCTCTACTAAAAATAAAATAAAAAAAAATTACCCAGGCATGGTGGCGCACACCTGTAGTCCCAGCTACTTTGGAGGCTGAAGCATGAGAATTGCTTGAACTCGGGAGGCAGAGGTTGCAGTGAGCCAAGATCATGCCACTGCACTCCAGCCTAGACAACAGAGTGAGACTCCACCTCAAAAAATAAAATAAAATACAACAAAACAAAATAAAATAAGGAAAGAATAGGGCTCAGGCTCAAAGCTTTTTGCAGATCATAACAGATACATAGAATTGAATAAGATAACCCTGATTTCTTTGTGTGTCTCTGTGCATCTGCTTTCTTCTTTATTTTCCCTTATATCTGTGTCTGTTGGGTCTCTCTATTTCATGGTTACCTTTTATTTGTGTTACATGATACTAACTTTTCATTTATAAGAGGAAGACATACTTCTAAAACTGTATTTCAACCAATGTGAAGCTTAACCAATGAGAAAAGCCTTTTCCCTAGGGGTTTTTGTCCAAAACAATTACGGACAAATGTTTAACTTCATTGTTGCCTAAGGTGGTGGATAACAGTAGGCACAAACAATAGATTCACCAAAAAGTGAAAAAAGAAAAGCTGGAGAATACAAAACTGGAAATATAAAATTTAATTCAAAGAATTGTATTCATGTTAATTATAAGAAGAGATTGTTTAAAGAAAAAATATGAAGTAAATGGCATTGTTAGTAGATACAATAAAATTAACTGTCAGCAGATGTAGTGAAACTTATGAAGGTGGTATGAGGATGACTGAGACTTAAAAGCAGGATTTGCAGTCAGATAGACATTGTTCATCCGTGTACTTGAAGTGTGACCTTGGACAAGTGCCCTAAGTTCTTTAGATCTCAACTTTCTCATCTGTAAAATGGTAGTCAGACCATATGCTACTTAGAGTAATAGTGAGAATTAAATGAGAATTGCATGTAAGACATGAAGCCAGGATGCTCCATTCCTGATGGCCTGCAAAAATCTAAGTTCTTTTTGCAATACTAGGGGTATCCTTAGAAGACTTCTCCTAATGATAAAAACAAGCAAGCAGGATTAAGTCAGGAAAAAAAATGGTAGAATAAGGACTTTCCAGCTATGTGGTAGCCTTGAAAAATAACAGCCCCCATTTCTGGTGCATCACGGCAACCATTAGATGGGCCAGAATGGAGTTGGAGTTTTTTCAAAGCTTCACTTATGAAGAACTGTTGTTATTTGAGCTGCCCATTGGTTCTTTGGAAGACCCTACTTGTAAAACTGTATTTGAATCAACTTGAAGCTCAACCAATGAGAAAAGCCTTTTCCCTGGGGGTTTTTGTCCAAAACAATCACAGACAAATGTTTTAGCTTCATTGTTGCCTAAGGTGATGGATAACAGTGGGACAAACAATAGATTCACCAAAGAGTGAAAAAAGAAAAGCTGGAGAATCCAATGTCTATGGGAGCTTTAAAAAATTCTATTGTATTCCTGGAAATCTAGAAATCAACACACCTAAGTAAGGCTGTGTGCTTTCCTAGGGCTTTGCACACGCTTAGAAAAGATCTGAGGAAACTCTAAGCTCGCACTTCTGGCAGACTGAGAGTTGGAGCATGCAGGAAATTAACACTAAGGCAGGATTGTTAATTGCCTGGCTGAGTGCTAAAGGTGTGCCCCAACACCCACCCAAAGACTGGGAGATTTATTGGTTTCAGGCATTTAAAGATATTTCTGTCTAATCATAAGATGACTACTAAGCTAACCAAGTAGATATCTCAGTGGCCACACAGAACAAATAATGCAGACTTCACAGAAATGGTTCACAAAAATCACTAAACAAATGACAACAAGCAGCAACAGCAAACCAAACTCTGGGGAGTTGTGGGGAATGGGTGGGGGTGGATCTGATTTCCTGAGTAATCACATGATGTAATTTTAAATTTATAGTTTTCAACAAAAATTTACAAGATACGCAAAGAAACTAGAAAGAGCATGGCAATGGTTATCAAAATAATGCACCCCTTCCCCAAGATTTTTATACCTTAATCCCTGAAACCTGTGAGTATGTTATCTTACATGGCAAGAGACTTTGCAAACATGATTATACTAAAGATATTCATATGAAGAGATTATTCTGGATTATCTGGATGAGCCTAATATAATCATAAGGTACCCTATGAGAAGGCAGGAGGGTCAGAGTCAGAGAAGGAGATGTGACAATGAAAACAGAGGTGGGAGTGATGTGGGGCCACGATCCAAGGAATGTGAATTGCCTCTGAAAACTAGAAAATGCAAGGACACAGGTTCTCCACTAAAGCATCCAGTAGGAAAACAATTCTTCTGACACCTTGATGTTAGTCCACTAAGACTGATTTTGAACTGTTTATCTCCAGAACTATAAGGCTGTATATTTGTGTTGTTTTATGCAATTAAGTTTGTGATAATTTATTACAGCAGCAATAGATGGGATTATTCAAAACCAATACAGATTTTGGCACCAAGAGTAGTAATGAGAGCTGTAATAAATACCAAAGGATGTGAAAGTAGGTTTGGAATTAGGTGATGGGTAGAGGCTGGAAGAATTTTGAGGAGCACGGAAAAAAGCCTAGATTGCCTTGAGCAGACTGTTAGTAGAAATGCAGATATTAATGATTTTGCTAGCGACACCTCAAAAAGAAAGGAGGAGTATGACAGATGAGACTGTATTGTTTTAAAGAATCATGAAGACTGTTAGTAGAAATATGAACATTAAAGGCACAGATGATAAAAACTCAGAAGGAAATGAAAAATGTAATATCAGAAACTGAAGGAAAGTGGATCCTTATTATATAGTGGCAGAAATTTTGGCTGAATGGTGTCCTAGAGCTAGATGGATAGAATAACTTATAAGGGATAAGCTTGGATATTTAGCTAAGGAGATTTCCCAGCCAAGTGTTGAAGATGTGGACTGATTTCTTCTTGCTGGTTATATTACAATGCTGAAGGAAAGAAATAGACAGAGGAAAGAATTGTTAAGCAAAAATAGAGCCAGAACCTGGTGGTTTGAACAATTCTCAGCCTTCCTATATTATAAAAGACATTAAAGTTAGGATATTCACTGTCAGAAAAGTATGCTGCAAAGGGAAATCCAAGAGTGTGGTTGGACAATCTTTTGCTAGCAATTCGAGTATCAAAAAGTCACAGAGAGCTTTTTGAAGAGATTAGACAAAGTTCCTCAGTTCCTTCAGCCATGGAGGCAGAAACCAGCAATAGAGATGGGATTATCTGGAAAAGATCTGTGGAGGAGCCACTTCCCTAATGGGGTGAATCACTGAGACATACATGAGAGAACCACTAGTTTCTTGAGAATGTTTTATCAGCAGAAATACTGCCATCTTGTACTGGACAGAGAGAGGAAAATATAGAAGAAGGCTGTTGGACTCCCCAAATTCTACAGGCAGGAAACAGGTGGTTAAATCTACTTAGCTACAAACATGTGTTACCCTTCTTGTAAAAGAAGAGATGATTTAGGGCAGAGTTGTTAGTCAAGAATGTGGAATTGGGAGCCCAGAGGGTGGAGCTGAGCAACTAGAAAGCAAAGCCACAATCACAGATGATTAAGGGCTTTGAAACCTAATAGAGTTTTCTCAGTTGGATTCAGAGTTGCTTGGGATTGGTGACTCATTGTTTTCCTTTTATTTTAATTCATTGTTTGAATGGATATGTCTCTGACTATTATGGTATCCCTACTTCATCATTGTATTTTAAGAGCAGATAACTTAATACTCAATACTCGAGTAAGGAGCAATAAAAAATGAAGTTAAGAAATGATTTCATTTACTAATAGCGTCAAAAAGAACGAAATACATATAAATAAATTTAACCAAAGAAGTATAAGGGTTGTACATGGAAAATGACAAAACATTACTGAAATAAACTGGAAAAGATGTAAACAAATAGAAATACACCCCATGCTCATGGATTAAAAGAATTAATATTGTTAAGATGAAAATACACCCCAAATTGAGCTGCACATTTAATGCAAACTTTATCAAAATCCTAGGAGACTTGTTTACAGAAATAGACAACCTGATTCAAAAACTCGTATGGAAATGCAAGGGACCCACAGGGACCAAAACAGCCTTGAAAAAAAAAAAAAAAGAAGACTCACACTTTTCTATTTCAAGTCTACTGCAAAGTTACAGTAACCAAGACAGTGTGGCACTAGCATAAGGATAGACTTGGATAAATAGGTATGAATTCAGAGTCTAGAAATAAATCCACAAATCTATCATCAATTGATTTTCAACAAGGGTACCAAGACAATTAAATGGGTGAAATAATTGTCTTTCCAACTAATGATGCTGGCACAACTGTGTGTTCACATGCAAAAGAATTAATTGAGTCTCCTACCTGACCCTAAATACAAAAATTAACTCAAAATGTATCAAAGACCTAAATGAAGAAACATAAAGTACAAGAAAATTTTTAGAAGAAAACATAGGAGTATATTTTTGTGACCTCTGATTGGGCAATGGTTTCTAAAGCAAAAGCAACAAAATAAAAAATAGATTAATTGGACTTCATGAAAATTAATAGTATTTATATATCAAAGTAAAAAGCTCACAGAATAGGAGAAAATATCTGAAAAATCACATATTGGTTAAGGGTCTAGTATCTATCATGCATAAAGAACTCAAACTAGACAGTGAAAAAGACAAATAACCCAATTAAAGTATGGGCTAAGAATCTGAAGAGACATTTCTTCAAGGAATATAAACAAATGGCCAATAGACACATGAAAAGATGCTTAACATCTTTATTCATTAGGGAAATGCAAATCCTAGCCACAAGGAGATACCACTTCATAACCAGTGGCATGGCAAAAAAAAAAAAAAAAGGTACAATAACAAACGTTGGAGATGATGCAGAGAATTAGAACCCTCAGACATGGCTGGATGGAAATGTAAAATGGTGCAGTGCTGTGGAAAACAGTTTGGCAGTTCCTCCGAAAGTTAACATAGAGTTATTATAATACTGACCCAGGAATTGTACTCCTAAGTAGATATCCAAGACAATAGAAAACATGTGCTCACAGAAAAACTTGTACATAAATCCTCATAGCAGTGTTATTTATAATAGCCAAAAAGTGGAACCAACCCTAATGTCTATGAACTGGTGAATGGATAAACAAAATGTGGTCTATCCATACAGTGGAATATTATTCAGCCATCAAAATAATGTAATGCCAATTCATGCTATGACATAGATAAATCTTGAAAGCATTGTACAAAGTGAAAGAAACCAAACATAAAGCTACATATCATATGATTCCATTCATATGAAATATCCAGAAGATGCAAATCCATAGAGACAGAAAGCAGATAAGTGATAACCAGGAGCTGGAGGAGGAGGGAATGGGAAGGGACAGCTAATTTGCACAATGTTTCTTTTTAGGGCAATAAAAATGTTTTGGAATTAGAGAATGGTGATGGTTACACAACCTTGTGAACATACTAAGAACCAGTGAGTTGTGCACTTTAAAATGGTGATTTTTATGGTACCTGAATTATATTTCAATAAAAAAGGGAAAAACAGAAAACAGTGTTAATCATGTGCTACCTTTTGCATTAAAAAGATAGTAGAAAAAAATATATGCTTGTGTTTGCCTAAAGAAACTATGGAAGGATATGCAAAAAACTAATAAAATTGGTTACTTATGAGGCAGAGGAAGTGGAAAACAGGGCAGGTAGGTATAAGGAGGGGAGCAAGCCTTTTCAATGCATGTCTTTCCATATTGCTTTGCTTTTTGAACCCTGTGAATTTTATATTAACTATTATAAAACATTAAACAGCAACAAGCAAACAAAAATTCTCAATAAATTGCTTCTTTTTTTTTCTGCCTGTACCACCATCTAG
Seq C2 exon
GCTGGACACCGCCCCCCAAATCCTGCCTTCTGGTGGGTCAATGGCACAGGAGCAGAGATCAAGTGGAGCTTTGAGGAGCTGGGGAAGCAGTCCAGGAAGGCAGCCAATGTGCTGGGGGGTGCATGCGGCCTGCAGCCTGGGGACAGAATGATGCTGGTACTCCCACGGCTCCCGGAGTGGTGGCTGGTCAGTGTGGCTTGCATGCGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000183549:ENST00000331849:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=PU(0.5=2.9)
A:
NA
C2:
PF0050123=AMP-binding=FE(16.9=100)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains