RnoINT0012479 @ rn6
Intron Retention
Gene
ENSRNOG00000031211 | Acsm5
Description
acyl-CoA synthetase medium-chain family member 5 [Source:RGD Symbol;Acc:1309578]
Coordinates
chr1:189243749-189247303:+
Coord C1 exon
chr1:189243749-189243968
Coord A exon
chr1:189243969-189247092
Coord C2 exon
chr1:189247093-189247303
Length
3124 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
TGGCTGCACCCACTGTCCAGACA
3' ss Score
3.77
Exon sequences
Seq C1 exon
GCAGAAGGTGACAGAAGACATGAGGTTATGGCTGAGAGGTCTGGTCTACCAGGCTCGGAGGAGTTCCTGGGGAGTCTTCAGGATTCACACACAGCCACCACCTCCCCCTATCCCTGAGGTTGTAGCTACCTGGGAAGCCATCAGCCTAGGGAAGCGGCCAGTGCCGGAGTACTTCAACTTTGCCCACGATGTGCTAGATGTGTGGAGTCAGCTGGAAAAG
Seq A exon
GTGAGGCTCACCCTGCCCTGGTGTCCCTCGGGGGCACCTGAAGTCCCCCCAGATACTGCAGTGAGACTGTAAGACAAGCACATTGCAACATTGTGACCTGGGAACTTGGTAAGTCCAAAAATTGAAACTGTTAACATTTAAGCCTGAGACCTGAAGGGGACAAATTAGACCCCCAGTGGTATGAGTCAGACACACCTTGAACAGTGTGCTTAAAGTGTCACCCAGCCCGAGCCCGGACCACAGAGGACATCTGTGTCTGCTCTTCATCCTCTTCCGATGGATCCTAAGCAGATGAGAGCTCTGTCTCTCATGCTCTTCTCTTCTGAGTAGGAGAAACAGAGGCTCAGGCTCAAAGCTTTTCACCTAGAAGTGAGCAAAAACAAACAAAACTCCTTGTTTTATATCATGCCTTAATGTGCACATGCTTCCTTCTTATTTCCCTTTCTATATGTGTCTGTTATGGCTATCTGTATTATATTTGATAGGAATAATTTCTTGGTAATAATAGAATGTAAAGTTTAATCCCAAGGAAATTTTAGTGTTAAATTTGTTTATTTTCTCAAAAATAAACAAACAAACAAAAATGGTTTTATGTATCCCTGGCTGGCCTGTAATTCATTACATAGACCAGGTTAGCCTTGAACTCACAGAGATCCACTGGCCTGCCTGCCTACTGAGTGTGTTTCTTTGTCTTTGAGACAGTCTCAATCTGAAACTCAGGCAGACCTAGAAGTATAGCCAACTTGTAGCCCAGCCTTGAACTCATGGCAAGCCTCCTGCCTCAGACTCCCAGGTGCTACAGGCATGTAGCAGTATGCCTATCTTTCAGGCATGATCTAGGATCCCTATTTTATCTTATCTGTCATCAATTCTGCCACCATAAATGCAGCAATACCACTGAGCGTGGTAAATTGGTACAGACAGAGTAAGGATGGGTGAGACGCCGCAGCAGCCTCTGCAGTCACTAGGCTTGTGTCATCTACATACTGTAATAACACTGAAAAGGAGAGAGAACCCAAATTCTCAGAACTCAGCAGAGACCTTGGCAGCAGAAGGGTTTATTACAATAGTTCTCTGAGCCTCAGTCTGAAAAGCAAGCCCAGGGGCCTTTTAAGCATCCCTGGTCCTGACCCAATTTTCTAGTCAACCAGAGGCCCTGGAAAACAGCAGTCCTCATCCCCAGTGGAGCCTGACAGCCTCAGAAGGTGAAGAATGAAGCCAGTTTGTCCAAAGCTTCATTTCCCAAAGAATAATCACTATTTGGTGTTATTTCCCCCATGTTTTCCTTTCCTTTTTGAGATTATAATTATAATATAGCTACATATTCTCTCCCTTCTCTTTCTTCCCTCCAAACCCTCGCACACATCCCTCCTGTTCCCTTCAAAGCTCTCATTTTCCTTATTGTTGAATGTGTGTGTACAGACACATATATTCCTAAACATAACTTGCTGTGTCCGTATGTTATTTTTATGCATATTTGCTTCTGAACAACCAGTTGACTTGGTGTTACTATTGTGAGGCCGTCTAGATTTGACCCAACTCAACCAGTAAGGAAAGTCTATTCTGGGGAAGCCATTTGCTGAAAAACTGTAGGCAAGTAGTTTAACATGACTACACGAAGCAGATGAAGTGTTAGATGTCCACAGGGCAAGCAGAAGACAAACCAGAAGCTAGTAGAGAAACTGGAAACATCCAGTGCACTCCTGCGCATCTCAGAATCAGTGTGCGAGCCTCAGGTATTACAGGCTCTTGCAAGTGACTGAAAAACACTGGACAAGCCCTGGGCAGGGTCTCAGAGTTTATGGCCTTGTCCACTTTCAGTTTGTTTTCTCTGTGCTGTAAGAGGTCTCCCAGCATTTCCCTCTGTCCATCGTGATGTCCCCACTGTCATGGACATCTAACTCTCTAGAACTTTAAGCCAAAATAAATTCTTCCTTAAGTTGCCTTTAGTCATGGCATTTTATCAAATCAACAAAAACTCACGCAGTCATTCAACCTGGCGAGACTATTCTAAAAACTAGTGAGTTGTGTAATTGTTTGTGGTGATTTGTAGGTGAAGTGAGCAATTGTTTAATTAAACAGGGAGGATCATGGGACAGTGTAAGTCTTCTTACCTGTTACATTACAATGCTGGTATGGGAAATTTGCTTAGGTTTACCTACCTCAACACTCAGAGGATACGTAAGTAACAAATAAAACTGACAAGTCTCCGACCTACATGGAGGGGGCAAGGTTTTTGGTTTGTGTTTGGCTGGTTAGCTTTTAGTTTTACAAAGGAGGGTCTCATGTAGACAAGGCTAGCCCTAAACTCACTAGTCAAAGATGATTTCGAATTCCTGATCCTCTTGCTTCTGTCTCCTAAGTCCTGGTTTTACAGGCACGCTACATAGCACCTTGTTTATCCAATGTTGGGGACTGACCCCAGGAATCGGTGTGTGTCAAACATGTACTCTATCAACTGACTCATACTCTTGGCCAATTATTTTGATTTTTGAATTCTGTGATCAGATAACTATGTTGTTGAAATTTCCAACCCCAATAAGTCCGTATAAAAACACACAATCCAATAATTATAGGCTGTAAGCCAAGTTTGGCCAGATCTAACACTATACTAAGTTATTTCCCAGCTACAAGGCCCCTTGCTACTTGTGGTTTCTCCTGGCCATGTGGTTCTGCTCCATCATGGCTTCCTCCTTTTCTTCAGTTCTCTCTCATTCTCCTCTCATCCTCTTCTACCTCTCCACCAGCCCCCACTCTAAACCTCCCTTCCCACCTTCCCCCTCCACTGCCCAATCAGAGGCTCTAGCTTCTATTGAGCAGTTAAAACAGGCAGAGGGTTCACATGAGATCACCCGAGTACATGATGGGCTGTTCATCAGGTACAACCCCTCATGAGGAAGCAGAATTAGCATCAGAATACAAACAGCATCAGGACAACTCACAACATTTCCCCCATTTTTTTGTCTAATTAAAAACGCTCCTTCTCCTCTGATAACAAACAATATATAAGAGGAACTATTCAACTATTCAATATAACTATAAAATATGTTTTTCTTAAGAAACAAATGAGCAAAACCACTCAATAATGGCTTCTATTATTTTCCTGGCTGCACCCACTGTCCAG
Seq C2 exon
ACAGGGCACCGCCCCCCAAATCCTGCATTCTGGTGGGTGAATGGCTCAGGAACAGAAGTCAAGTGGACATTTGAGGAACTGGGAAAGCAGTCCAGGAAGGCAGCCAACATCTTAGAGGGAGCATGTGGCCTGAAACCTGGAGACAGATTAATGCTGGTGCTTCCGAGACTCCCAGAATGGTGGCTGACCATCGTGGCTTGTATGCGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000031211:ENSRNOT00000046025:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.021 A=NA C2=0.011
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=PU(0.5=3.0)
A:
NA
C2:
PF0050123=AMP-binding=FE(16.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]