GgaINT0015375 @ galGal3
Intron Retention
Description
NA
Coordinates
chr14:15220918-15221566:-
Coord C1 exon
chr14:15221467-15221566
Coord A exon
chr14:15221038-15221466
Coord C2 exon
chr14:15220918-15221037
Length
429 bp
Sequences
Splice sites
5' ss Seq
GAGGTAATG
5' ss Score
8.73
3' ss Seq
TTAATGACCTTGTCTTCTAGGTT
3' ss Score
10.1
Exon sequences
Seq C1 exon
GTATCGCATTGGGCCATTTGAGGTAGAGAGTGCCCTGATAGAACACCCAGCAGTAGCAGAAACAGCTGTTGTCAGCAGTCCAGATCCCCTCAGAGGAGAG
Seq A exon
GTAATGATGCTGCACAGTAGTGGCAGAAGCCATACGTTTGTTTAAATGTATAACTATATAAATAAGTTCATTTTTTACTGAGTAATGTAAAGCTGTAAGGCAAACTTCAGAGAGAGATAAAACGTTCAGCGAGCTCTGCAAAGACAATTCTTGTTACCCCTTCTTCTTGACCTCCTACGAGGGCATAGAGCAAAAGCTCTTTTTTCTGTAACAGGGGCAGGAAAACTATACTTTCAACTTTCCCTCTGGCATAAAGGTGTGCAAATGCTGAGCACAACCATTTCATACACTGCTCTGGTTTCTCTCTTACTCCTTCTTGCATGTCATGACTCCAAGTTCATATCATGTCATAACTGCTTACTGGTAGCCAGTGCATCAGTTCTTAAAAACTAATAGTGTCAGATCACTCTTAATGACCTTGTCTTCTAG
Seq C2 exon
GTTGTGAAAGCATTTGTGGTCCTGTCTGACGCCTTTTCATCCAGTGATTGTGAGAGCTTAGCCCGCGACTTGCAGGAGCATGTCAAGAAAACCACTGCTCCATATAAATACCCCAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000018875:ENSGALT00000003038:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.059 A=NA C2=0.025
Domain overlap (PFAM):
C1:
PF131931=AMP-binding_C=PU(32.1=76.5)
A:
NA
C2:
PF131931=AMP-binding_C=FE(48.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCATTGGGCCATTTGAGGTA
R:
TCCTGGGGTATTTATATGGAGCAGT
Band lengths:
214-643
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]