RnoINT0012464 @ rn6
Intron Retention
Gene
ENSRNOG00000014726 | Acsm4
Description
acyl-CoA synthetase medium-chain family member 4 [Source:RGD Symbol;Acc:727928]
Coordinates
chr1:189453282-189455528:+
Coord C1 exon
chr1:189453282-189453381
Coord A exon
chr1:189453382-189455408
Coord C2 exon
chr1:189455409-189455528
Length
2027 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGG
5' ss Score
7.81
3' ss Seq
AAATGGTTTTTCTGCTGCAGGTG
3' ss Score
9.04
Exon sequences
Seq C1 exon
GTACCGAATTGGGCCGTTTGAAGTAGAGAGTGCACTGATAGAGCACCCAGCAGTAGTTGAGTCAGCTGTTGTCAGCAGTCCAGATCCAATCCGAGGAGAG
Seq A exon
GTAGGGTGGATGTCAGAACTAAAGCAGCAATTTCATTTTCAAGTTCTGTTCATGTATCCATGGCAAAGGCCAACTTAAGGTAACTTGTTTAATTCTCAAAGGTACATGTATGCCAGGTAATCTACTTTACAAATGACTTCTACCCCCCAAAGAGGTCTGGTATTCTTTGGGTGGCCTGGGTCAGAAATGCCCCTTAATTCAGGGGTTCAAGCTTCAGACCAGCATACCTGCGATGTTATCAAGGCTGTCTCCCTTGTCTGCCTGAGATCCTAAGTTCTAGTTCCTCTTATCACATAGCAATCAGCTCAAGACACAAATAAATGTAACTTGTCTCCTCCCTACCAGAAAGGAGTAGATTCTTTTTGCACCCGTTTCAGGAAAATTCTACCACATCTCTAGCCAGTGTGGCCCAGCAACTTGTATAGGCCAAATGGCCAAGCCTGGATGATATGGTGGTCTTGGGAATTAGAAAGACACGAGGGGAATACTGCTTAGACAACTCATGTGCTGTTGTTCCCTGTGTAAGCAAAAGCATCAGATACAACCGTTACAGCTCGAAATACATTCCTTTTTTTTTTTTTCAACTTTATTAACTTGGGTATCTCTTATTTTCATTTTGATTGTTGTTCCCCTTCCTGGTTTCCGGGCCAACATCCCCCTAACCCCTCCCCCTACTCTTCTATATGTGTGTTCCCCTCCCCATCCTCCCCCCATTATGACCTTCCCCCCAACAATCACGTTCACTGGGGGTTCAGTGTTGGCAGGACCAAGGGCTTCCCCTTCCACTGGTGCTTACTAGGCTATTCATTGCTACCTATGCAGTTGGAGCCCAGGGTCAGTCCATGTATAGTCTTTGGGTAGTGGCTTAGTTCCTGGAAGCTCTGGTTGGTTGGCATTGTTGTTCATATGCAGTCTCGAGCCCCTTCAAGCTCTTTCAGTCCTTTCTCTGATTCCTTCAACGGGGGTCCTGTTCTCAGTTCCGTGGTTTGCTGCTGGCATTAGCCTATGTACTTGTCATATTCTGACTGTGTCTCCCAGGAGAGATCTACATCCGGTTCCTGTCAGCCTGCACTTCTTTGCTTCATCCATCTTGTCTAATTCGGTGGCTGTATATGTATGGGCCACATGTGGGGCAGGCTCTGAATGGGTGTTCCTTCAGTCTCTGTTCTAAACTTTGCCTCCCTATTCCCTCCCAAGGGTATTCTTGTTCCCCTTTTAAAGGAGTGAAGCATCCCCATCAAAATACATTTCTTAGAGATAGGAATAGGAAATCGTATCCAAGGTTGGCCCAAAATTCCCATGGGTCTATTTAGGAGGCACATTTCCCTTTCCTCCTGGAAGTTTTCTGAAGACTCAGCAAGCAGAAAAATGTTGAGCCAGTGTGGCTATCAGTTCTCTCCGTCCCTTTTTCTGTGCCTCCCTCTCACACACCAGTGGTCTTCCACAGAGCACTCTGAACGACATCTTCCCCTCTCTGCTCTTGATCTATTCCAATCTGCAAAACATTCTTCTCCTGCTGCTACAGCCTCATCTTTTCAATATAACTGATTTCAGTCAAATGCCAGAAGCAAGTGCCAATTAGAATCAGTGTACTAATTAACCTCTATAAGTGTTTTTAAGCAGTATTCCAAATGAAGGAAAAACTGGGAGGACAGCAACCCCTTACAGATAGACCCTTCCTGATTCTGTACTTTGTCAGATCTCTACAGACTATCCTCTTTAGAATCTCCATTCAACCTGCTCAACATGCCTCTCACTGTAGAGGTGCCATGGCATAAATGTGCACCTCAAAATCAAGGACTGCCTCATACAAGTGTTAAGTCCATGGGATATATAAACCGAACCCAGCATTCCTCATAATCACAGTCCATTGCCCTGGGAAGAGATCCTCAAATATTCTTTATAATTTGTACCCAAGCTTCATCCAGTCTCTGGAGTTTGCACTGCTATCAACAGTCAATGCCTGCATTCAGCAATAGTTCCAAACCCTTGATGTGTTTTACAAGCAAATGGTTTTTCTGCTGCAG
Seq C2 exon
GTGGTGAAAGCGTTTATTGTATTAGCTGCACCCTTCAAGTCCTCCAACCGTGAGAAGTTAACTGCTGAACTTCAGGATCATGTGAAAAACTCAACAGCACCTTACAAGTACCCAAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014726:ENSRNOT00000034610:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.075
Domain overlap (PFAM):
C1:
PF131931=AMP-binding_C=PU(32.1=76.5)
A:
NA
C2:
PF131931=AMP-binding_C=FE(48.1=100)
Main Inclusion Isoform:
NA

Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]