HsaINT1002666 @ hg38
Intron Retention
Gene
ENSG00000215009 | ACSM4
Description
acyl-CoA synthetase medium-chain family member 4 [Source:HGNC Symbol;Acc:HGNC:32016]
Coordinates
chr12:7324499-7327095:+
Coord C1 exon
chr12:7324499-7324598
Coord A exon
chr12:7324599-7326975
Coord C2 exon
chr12:7326976-7327095
Length
2377 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGAT
5' ss Score
6.04
3' ss Seq
AATTAACTTTTCTGTTGCAGGTG
3' ss Score
10.66
Exon sequences
Seq C1 exon
GTACCGTATTGGGCCATTTGAAGTGGAGAGTGCACTCATTGAGCATCCAGCAGTTGTTGAATCGGCTGTTGTCAGTAGTCCAGATCAAATCCGCGGAGAG
Seq A exon
GTAGATGAATGTCATTTATTAAAGAAGCAACATCATATTTTCAAGTTCTGTCCATTTGACCACTGTAAAGGCTGAACCAAGAGAGGTCAATCTATTAATTCTCGTTATGAAGCATGCATTTGGCCAAAATATAAATCAGGCAACCAACTTTACAATAAGTTGTGTCCCAAAGGGGTGGTATTAGAATTCTTTTGATGGCAAGTGGCAGAAACACAATTCCAACTGCCTTAAGTTAAAAAAAAAAAAAAAGCATTTGGCTCATATAAGTGACAAGTACTTAAGTACAGCCACATCCAAAGGTTCATGTGAGGTTGGCAAGATTTAGCCCCTCTTCACTTTTGGCTCTGCTATTCTTTGTTATGGCTCCAGTTGATCAGATTCTTCCTACTTGATAGCAACCAACTCCAGGTGTATACACCTTAGCAACCCTCCACCCCTTCAGGGAAGGATACAGCTCTGTTTTCAGTTGTTTCAAGTAACTCTCAAGACTTCATTTGCCTACCTTAGATCACATCTCTAACCAATGTGGTTCAGAGACTGGTACATGCTGATCGGTCAGACTTGGATCATACGTCTATCCTTGGAAGTAGGTGTTGGTGTCAGTCCCACCAGAGAGAAGTTAGGGTAATACTCCATAGGAAAATTAGTTACTAAAAAGGAGGAACAGATACTGCATAGGCAAAAGCCACAGATTTCACTGAATGGAAAACTGTCATGGAATTCAGAATATCTTTTCTCACAGAAACAAGACAAATAGAAAATGGTGGGCTGGGCACGGTGGCTCACGCCTGTAATCCCGGCACTTTGGGAGGCCGAGGTGGGTGGATCACTTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACCCTGTCTCTACTAAAAATACAAAAATTAGCCTGGCATGGTGGCGGGCACCTGTAATCTCAGCTACTTAGGAGGCTGAGGCAGGAGAACTGCTTGAACCTGGGAGGCAATGGTTGGAGTGAGCCAAGATTGCACCACTGTACTCCAGCCTGGACAACAGAGACAGACTCTGTCTCAAAGAAAAAGCAAGAAAGAAACAAAACTGTGGCCAGGTTCCCAAACAAGTCTCATGAGCCTATTTAGGATCTAAGGAAAGGGAACTCTGGCAATGACAATAATAGCCTTAATTCTAGGAGGAAGCCCTATTTTCATAATTGCTTTTCCTTATGGAAGTTTCTACAGACACAACAAGTGACAAAATTTCAAAACAATTTGTCAGCATCGTTCCACATCTGTACCTCCCTCTCACACACCAGTGAGCCTCTGTAGTGACACTGTGGATCCCATACTCTTACCTCCTGTACTCACTCTACTCTCCATCTATTCCATTCTCAAAAATAGTTTCTTCCTGCCACCATGTTCTTATTCTCTCAATATAAATGATTTCAGCTGAACAGAAGTAACCAACAATTAGAATCAATGTATGAACAATAAATAATATAAATTATGCTTACTAACCTCAGTAATTGTCTAACTGGTGGGTTTGAAACAGCATTTCAAAGAGAAGCAAACAATATGAGGCAAAAAAGACCTCACATAGATCAATCCTTCCTGAGAGGTTTTTGGCTTTTGGCTTTGTTTTGTTTTTTTGAGATGGAGACTTGCTCTGTCACCCAGGGTGGAGTGCCGTGGTGCAGTTATAGCTCACTGTAACCTCTCAAACTGCTGGGCTCAGTCGATCCTCCTGCCTCAGGCTCTCAAGTTGCTAGTACTACAGGTGTGCACAACTGCACCCTGGTTAATTTTCTTTTTAAGTCTTTGTAGAGATGGGGTCTCACCATGTTGACCAGGCTGGTTTCAAACTCCGGGGCTGAAGTTATCCTTCTACCTTGGCCTCCCAAAGTCTTGGGGTTATAGGTGTAAGCCACCATGCTCAGCCCTTTCCTGAGATTTGATCTCCCAGGATACACAGTCCTTCCTCCGTTGAGACCCTCCAAACTGCTTTGAAACCACATATTCTCTAGGAACTCCATTTGTTCCCCTGCTACATGCTTCTAATGGTATAGGTTTAATGGAGTAAGTGGTCATCCATAAACCAAGGACTGTCTGTGTAATAAATAGGATCAGTCTGATTGAAATGTTAAATATATATGTATCTATAAATAGAACTTAGCTTTCTTGAACTGCTGCACTCCTCACACTCATAAACCACTTACCTGAAAATATTCTGAAAAACCTCACTTTGTAATTGTATCCAAGCTTTGTTCAGAGGTAACCTCTGGCATTTGCAGTCATCACACAAACTGTTATTAATAAATAGTAAGCACCTGTGTTCAGCATTTGTTGCAAATCCTTGATGTGTCTGAAAAACAAATGAGCAAGATAAATTAACTTTTCTGTTGCAG
Seq C2 exon
GTGGTGAAAGCTTTTGTTGTCTTAGCTGCACCCTTTAAGTCCTACAACCCAGAGAAATTAACTCTTGAACTTCAGGATCATGTGAAAAAATCAACTGCACCTTACAAATATCCAAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000215009:ENST00000399422:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF131931=AMP-binding_C=PU(32.1=76.5)
A:
NA
C2:
PF131931=AMP-binding_C=FE(48.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains