GgaINT0015621 @ galGal3
Intron Retention
Gene
ENSGALG00000004735 | MAP2K3
Description
NA
Coordinates
chr14:4514902-4517041:-
Coord C1 exon
chr14:4516993-4517041
Coord A exon
chr14:4515016-4516992
Coord C2 exon
chr14:4514902-4515015
Length
1977 bp
Sequences
Splice sites
5' ss Seq
AAAGTACGT
5' ss Score
7.99
3' ss Seq
TGTTACCTTTCTCCTTACAGAAC
3' ss Score
12.36
Exon sequences
Seq C1 exon
GCCGCCAAGGAACCTGGACTCCAGAACCTTCATCACCATTGGAGACAAA
Seq A exon
GTACGTGTTGATGTTCTTGTTTCCAATTCTGCTTGCCTCCAGTATGGGAGTAGTATGGATCATGCTGCTGTGACAACTTGTCAGATCAGGTCTTTGTGGTCCCAAGCATCCTTTAATCCCCAGTGCGTCCTCCCGCTGCAGCCTCACGGGTTGCAGCTTTGGAGGGGGGGGATGAGGTGTCCTCAAGCAGGGCCTTTCCCCTGTTGGCTGTGGGGTTGTGCTCATATTAAGAGCATCAGGGTGACGGGCACGTGTGGGGTGAGGCTTTGCCCTGAGTGGGATCCTGCTCCCTTGGCAGCCTCCTCACTCTTAGCCAGCCTGGCTGTGCCCTGCTGTCCCAGCCCACGTCCCCTTTGTCCCCATTGCTGCTGGCATCCCACCAGAAGCTGGGCTCAGAGCTCCTCTCCAAATCCTTTCCAAGCTGCCTGATGAAAAACGCTGCTAGAAATAGCTGCCGTCTCCCTTTTATTTCGTTCTCTTGTTACGGTTTCTCCTGGGGCTGCAATTGACCTAAAAATACGGTGTGTTGGGTCAGTCCCATCCTTGGTGCAAGGTTTTAGGTTTTGAGGGGAGAGAAACAGCCTGGGCTGGGTGCAGGGAGCAGCCCTGCTGCTGGTGTTGTGTTCTAGCTGTTGTTGTGTGTATTAATGGCTGGGGGAGAGGCTGTGTGCAGCAGCCTGGGCACAGTGTGTGCAATGGGAGAGCTGCAGCCCGGGGGCAGCTCTGCAGGCTGTGCCCTCCCTGCAGTGCATTGTTCTGAGGGCTTCTGCATCCGTGCTCTGCCTGCCCTGAGATCTGCAGCTCAGGTTTGCTCTGGGTGCTTCAGAACAACACAACGTGGGATGGAGGAGTGGTGGGTGCAAGGACAGCTTTGGGTTGTGAGATGAAGGGTGACTGTGGGTCCATCTGATCCATGCGGAGCAGAGGGTAAGGGGTGCAGTGAGGGTCGGTTTTGTTCTGTTGGTTCATTATCTCTGCAGCTGGGCAGGGCCATGCTGGTTCCTGGAGTGTGCTGGGAACTGCCAGCGTCTGGGAAAGCCTGCGGGTAAATGCCAGGAACAAAAACACAATGCCCTGGAACAATCATGGAACATGTGTCCTGAAAAGCCACCACTAGGTCCTTCCTGGAGGCCCATGCAGGAGCTGTAAGCCTGCACTGTGCCTCTGCCCAGGGCAGTGAGGCGGGGGCTGCATGAATCCCCCCCGTATCCCCATTGGATCCTCTGTCCCACCTGGGATAGGCTGCCACTTCCCTGTGCCATGCAGCATAGCTTCCTGCTGAGCTCAGCCCCAGACCTCCTTCAGCTGCCCACCACCCCCATCTGGTCCAAATTAGTGGGGCTGGTGGCTAGCATGGCCACCAGCCTGGTAGCCCTGGCTCCCAGCACGCTGCTGCCCTTCTGCTCTGGGTGCAACAGTGCTTCCAAAGCTGTGCAGTGCTTTTCCCACCCTTTGCTGCTGCTGGGTCAGTTTGGCATCCTGGTGTTATTTTTGTTCCCTGGGACCGGAGGGAAGCTGCAGGCTGGATGAAGTCCTGCCTGGTTGAAAGGAGGTCTGTAACTTATTAAGAGCAATGAATGCAGCCTCCAAAAATAGCCCATGTCTCACTCCAGCACTGTATGCCCTGCCCGGCGGAGCAGACAATTACAGGGCAACGTGTGTTGGGGGAAACTTGTCCATGGGATGTGCAGAAACTCGCCGGCAGAGAGGCACCGAGCCTTGGGCCTCTTCCAGTCACACTGTGCCCTTTGGCCAATCCCAATCTCTAGCTTCAAAGGGGTATTCAGTGAGCCCCAAGGAGCCAAAAATGCATCCATCTGCTCTAAGCGTGGTGGGCTGCTGGGATCCTGTAGGAGCTGTGGTTTGGGTGTGCTCTGCATGGCTGCAGTGCAAGCAGGGAACTTTGCCTTTATGATAATTGTGCTCCTGCCTGATTTGTTTGGTTTTTTTTTTTTCTTGTTACCTTTCTCCTTACAG
Seq C2 exon
AACTTTGAGGTGGAAGCTGATGACCTGGTGACTATTTCAGAGCTGGGCCGGGGGGCCTATGGTGTGGTGGAGAAAGTGAGGCATGCTCAGAGTGGCACCATCATGGCCGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004735:ENSGALT00000040763:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.412 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0006920=Pkinase=PU(11.1=76.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]