MmuINT0094974 @ mm10
Intron Retention
Gene
ENSMUSG00000018932 | Map2k3
Description
mitogen-activated protein kinase kinase 3 [Source:MGI Symbol;Acc:MGI:1346868]
Coordinates
chr11:60942305-60943264:+
Coord C1 exon
chr11:60942305-60942353
Coord A exon
chr11:60942354-60943150
Coord C2 exon
chr11:60943151-60943264
Length
797 bp
Sequences
Splice sites
5' ss Seq
AGAGTAGGT
5' ss Score
4.84
3' ss Seq
CTCTCCCTTTGCCTCTTAAGAAC
3' ss Score
6.96
Exon sequences
Seq C1 exon
ACCCCCCCGGAACCTGGACTCCCGGACCTTCATCACTATCGGAGACAGA
Seq A exon
GTAGGTGGTAACTAGACACTGAGAGGCCTCCATAGGGCCACTGAGAGGTAGCTGGAGCTGGGCCTCAGGGAGGAGCTTACCGTAGCTTATCATGCTGGTGGCTGTGGCCCTGGGCTATCTGCCCTTAGACCTCCTCTCTGGAAGAAGTACATTCCACCTGCCTTATAGGGAGGGGTGTGAGGAGCGCAGAGCTGCCACACTGCCTACCTCAGAGTGTGGGCTATGAATCCCACATGAAATCTGTACCACCTGGAAGCACCATGTGGGACATGTAGACTCCTGGGCTCCCCAGACCCCAGGTCAGACCCTAGACTCCATACTGTCCATACCCCTGAGTGCCTTGGAAGGCCACCTACTATTGAGAAGCCTGATTTGGGGATGTGTACCAGGCAGAGTAGGCCGAGAGCCTCTTCTTGGAAGATCCTCCCTCCCCAAGCCTTTGTCACTGCCTGGTGTTCTGTTAGTCCAGTTGTGTAATCCCATGTCTCTCACTCAGGGGAGGGAACTCCCACAAAGGGTCAGTAGATGATTGACTAATAGCTCCCTTTGCTGAGATGTGTGTGGAAGACGTCTCCCATAGTCTCCGAGTTTTTGGTTTTGCACCCATTTTATAGAGATCAGCGGTAGGGTCAGATTGGCTCAGTTCTTTCCACTGGGTCACAAAGCGTATAGTACATGGCGTATAGTAGCTGCGAGCTCAAATCTGACAAGCTGGCCCTCTGCTTTTCTCTGGGTGAGGGACAAGAGCCAGTTTCCAGCTTGGTGCCTACCAATCACCTCTCCCTTTGCCTCTTAAG
Seq C2 exon
AACTTCGAAGTGGAGGCTGATGACTTGGTGACCATCTCAGAGCTGGGTCGTGGAGCCTATGGGGTGGTAGAGAAAGTGCGGCATGCTCAGAGTGGTACCATCATGGCTGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000018932:ENSMUST00000019076:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.471 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0006920=Pkinase=PU(11.1=76.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types