GgaINT0015621 @ galGal4
Intron Retention
Gene
ENSGALG00000004735 | MAP2K3
Description
dual specificity mitogen-activated protein kinase kinase 3 [Source:RefSeq peptide;Acc:NP_001012805]
Coordinates
chr14:4495490-4497629:-
Coord C1 exon
chr14:4497581-4497629
Coord A exon
chr14:4495604-4497580
Coord C2 exon
chr14:4495490-4495603
Length
1977 bp
Sequences
Splice sites
5' ss Seq
AAAGTACGT
5' ss Score
7.99
3' ss Seq
TGTTACCTTTCTCCTTACAGAAC
3' ss Score
12.36
Exon sequences
Seq C1 exon
GCCGCCAAGGAACCTGGACTCCAGAACCTTCATCACCATTGGAGACAAA
Seq A exon
GTACGTGTTGATGTTCTTGTTTCCAATTCTGCTTGCCTCCAGTATGGGAGTAGTATGGATCATGCTGCTGTGACAACTTGTCAGATCAGGTCTTTGTGGTCCCAAGCATCCTTTAATCCCCAGTGCGTCCTCCCGCTGCAGCCTCACGGGTTGCAGCTTTGGAGGGGGGGGATGAGGTGTCCTCAAGCAGGGCCTTTCCCCTGTTGGCTGTGGGGTTGTGCTCATATTAAGAGCATCAGGGTGACGGGCACGTGTGGGGTGAGGCTTTGCCCTGAGTGGGATCCTGCTCCCTTGGCAGCCTCCTCACTCTTAGCCAGCCTGGCTGTGCCCTGCTGTCCCAGCCCACGTCCCCTTTGTCCCCATTGCTGCTGGCATCCCACCAGAAGCTGGGCTCAGAGCTCCTCTCCAAATCCTTTCCAAGCTGCCTGATGAAAAACGCTGCTAGAAATAGCTGCCGTCTCCCTTTTATTTCGTTCTCTTGTTACGGTTTCTCCTGGGGCTGCAATTGACCTAAAAATACGGTGTGTTGGGTCAGTCCCATCCTTGGTGCAAGGTTTTAGGTTTTGAGGGGAGAGAAACAGCCTGGGCTGGGTGCAGGGAGCAGCCCTGCTGCTGGTGTTGTGTTCTAGCTGTTGTTGTGTGTATTAATGGCTGGGGGAGAGGCTGTGTGCAGCAGCCTGGGCACAGTGTGTGCAATGGGAGAGCTGCAGCCCGGGGGCAGCTCTGCAGGCTGTGCCCTCCCTGCAGTGCATTGTTCTGAGGGCTTCTGCATCCGTGCTCTGCCTGCCCTGAGATCTGCAGCTCAGGTTTGCTCTGGGTGCTTCAGAACAACACAACGTGGGATGGAGGAGTGGTGGGTGCAAGGACAGCTTTGGGTTGTGAGATGAAGGGTGACTGTGGGTCCATCTGATCCATGCGGAGCAGAGGGTAAGGGGTGCAGTGAGGGTCGGTTTTGTTCTGTTGGTTCATTATCTCTGCAGCTGGGCAGGGCCATGCTGGTTCCTGGAGTGTGCTGGGAACTGCCAGCGTCTGGGAAAGCCTGCGGGTAAATGCCAGGAACAAAAACACAATGCCCTGGAACAATCATGGAACATGTGTCCTGAAAAGCCACCACTAGGTCCTTCCTGGAGGCCCATGCAGGAGCTGTAAGCCTGCACTGTGCCTCTGCCCAGGGCAGTGAGGCGGGGGCTGCATGAATCCCCCCCGTATCCCCATTGGATCCTCTGTCCCACCTGGGATAGGCTGCCACTTCCCTGTGCCATGCAGCATAGCTTCCTGCTGAGCTCAGCCCCAGACCTCCTTCAGCTGCCCACCACCCCCATCTGGTCCAAATTAGTGGGGCTGGTGGCTAGCATGGCCACCAGCCTGGTAGCCCTGGCTCCCAGCACGCTGCTGCCCTTCTGCTCTGGGTGCAACAGTGCTTCCAAAGCTGTGCAGTGCTTTTCCCACCCTTTGCTGCTGCTGGGTCAGTTTGGCATCCTGGTGTTATTTTTGTTCCCTGGGACCGGAGGGAAGCTGCAGGCTGGATGAAGTCCTGCCTGGTTGAAAGGAGGTCTGTAACTTATTAAGAGCAATGAATGCAGCCTCCAAAAATAGCCCATGTCTCACTCCAGCACTGTATGCCCTGCCCGGCGGAGCAGACAATTACAGGGCAACGTGTGTTGGGGGAAACTTGTCCATGGGATGTGCAGAAACTCGCCGGCAGAGAGGCACCGAGCCTTGGGCCTCTTCCAGTCACACTGTGCCCTTTGGCCAATCCCAATCTCTAGCTTCAAAGGGGTATTCAGTGAGCCCCAAGGAGCCAAAAATGCATCCATCTGCTCTAAGCGTGGTGGGCTGCTGGGATCCTGTAGGAGCTGTGGTTTGGGTGTGCTCTGCATGGCTGCAGTGCAAGCAGGGAACTTTGCCTTTATGATAATTGTGCTCCTGCCTGATTTGTTTGGTTTTTTTTTTTTCTTGTTACCTTTCTCCTTACAG
Seq C2 exon
AACTTTGAGGTGGAAGCTGATGACCTGGTGACTATTTCAGAGCTGGGCCGGGGGGCCTATGGTGTGGTGGAGAAAGTGAGGCATGCTCAGAGTGGCACCATCATGGCCGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004735:ENSGALT00000007540:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0006920=Pkinase=PU(1.3=75.0)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]