GgaINT0019476 @ galGal4
Intron Retention
Gene
ENSGALG00000004297 | DNAH1
Description
dynein, axonemal, heavy chain 1 [Source:HGNC Symbol;Acc:HGNC:2940]
Coordinates
chr12:3067697-3068458:+
Coord C1 exon
chr12:3067697-3067846
Coord A exon
chr12:3067847-3068371
Coord C2 exon
chr12:3068372-3068458
Length
525 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGAT
5' ss Score
7.25
3' ss Seq
TTCCTCTGCGCCTCTTTCAGGAC
3' ss Score
10.96
Exon sequences
Seq C1 exon
GCTCTCTTCCGTCCCGTGGCTATGATGGTCCCGGATTACTCCATGATTGCTGAGATCTCCCTCTACTCCTTTGGGTTTAATGAAGCTAAAGTCCTTGCAAAGAAGATCACCACAACATTTAAGCTGTTGTCAGAGCAGCTCAGCACCCAG
Seq A exon
GTAGATGCCTTAATGTCCATCAGTATGTTTTATAAAGGTGAGGTTTCCTCAGTCTAGGTACAGATTACCCCTATGAAGAAAAGCTGAAATAGTTGGGCTTGTTTAGCCTGGAAAAAGAAGGCTTTGGGGGGGCCTCACTGCAGCCTCCCAGTACTTGAAGGGAGCTTACAAGCAGGAGGGGGACCAACTTTTTACATGGTTTGATAGTGACAGGACTGGAGGGAATGGCTTTAAAAGAGGGGAGATTTAGATGTTAGGAAGACATCTTTTCTCAGAGTGGTGAGGCACTGTAACAAACTGCCCAGAGAAGTTGTGGTTGCCTCATCCCTGCAGGCATTTAAGGCCAGGTTGGATGGGGCCCTGGGCAACCTGAGCTGGTGGGAGGCAGCTCTGCCCATGGCAGGGGGATTGGAACTATGTGATCTTCAGTGTCCCATCCAACCGAAGCCATTCTGTGGTTTTTATGATGATTTTTAGGTGATGCTCATGCATCTGATAACACTGTTTCCTCTGCGCCTCTTTCAG
Seq C2 exon
GACCACTATGACTTTGGAATGAGAGCTGTGAAGACTGTCATCTCAACAGCTGGCAACTTGAAAAAGGAAAATCCTACTATGGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004297:ENSGALT00000006843:32
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(21.2=100)
A:
NA
C2:
PF127742=AAA_6=PD(10.4=82.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCTTCCGTCCCGTGGCTAT
R:
GGATTTTCCTTTTTCAAGTTGCCA
Band lengths:
222-747
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]