RnoINT0048585 @ rn6
Intron Retention
Gene
ENSRNOG00000026914 | Dnah1
Description
dynein, axonemal, heavy chain 1 [Source:RGD Symbol;Acc:621795]
Coordinates
chr16:7376262-7376869:-
Coord C1 exon
chr16:7376648-7376869
Coord A exon
chr16:7376349-7376647
Coord C2 exon
chr16:7376262-7376348
Length
299 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
CTTTTGTGCGGTGTGTACAGGAC
3' ss Score
7.02
Exon sequences
Seq C1 exon
TCCAGAGAGTATATTAAGTCCCTGGGTGGGGCTGTGATGTGTCTACCTTTCCTGTGTGTGTTGTATGTTCAGGCCCTCTTCCGACCTGTGGCCATGATGGTCCCCGATTACGCCATGATTGCTGAGATCTCACTCTATTCCTTTGGCTTCAATGAGGCCAATGTGCTGGCTAAGAAGATCACCACCACCTTCAAGCTGTCTTCTGAGCAGCTCAGCTCCCAG
Seq A exon
GTAAGGCCCTGCATAATTCCACAGCCCCTGATTGAAGTATTGCCCCCTCTGTGAGAGTGCTTCAGAATAGGGACTCCTGTAGCCAGAGGACTATTGGGATGGTGACCTAGAAGGTGCCAAAGCAGCCCAAAGGAGAGCACCTAGCCCAGTATGCAGGTGAGTAGCCACAGCAGACCTGTGAGCAAAATGACATCTCAGCTCCAAGATGGGTGGTGAGGCATTAGCCGGGTTCCATGTGGAAGGCCATGTTCGCAGGGCAGCGTCCGCACTCACAGGCCCCTTTTGTGCGGTGTGTACAG
Seq C2 exon
GACCACTATGATTTCGGGATGAGAGCCGTGAAGACTGTCATCTCAGCAGCCGGGAACCTTAAGAGAGAGAACCCTACCATGAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026914:ENSRNOT00000035009:33
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(33.6=100)
A:
NA
C2:
PF127742=AAA_6=PD(11.1=82.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGAGAGTATATTAAGTCCCTGGG
R:
TCTCTCTCTTAAGGTTCCCGGC
Band lengths:
292-591
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]