HsaINT0049162 @ hg19
Intron Retention
Gene
ENSG00000114841 | DNAH1
Description
dynein, axonemal, heavy chain 1 [Source:HGNC Symbol;Acc:2940]
Coordinates
chr3:52397011-52398740:+
Coord C1 exon
chr3:52397011-52397160
Coord A exon
chr3:52397161-52398653
Coord C2 exon
chr3:52398654-52398740
Length
1493 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGG
5' ss Score
6.34
3' ss Seq
CTCCTTCTGTATGGCGACAGGAT
3' ss Score
6.08
Exon sequences
Seq C1 exon
GCGCTCTTCCGACCCGTGGCCATGATGGTTCCAGATTACGCCATGATCACTGAGATCTCCCTCTATTCCTTTGGCTTTAATGAGGCCAGTGTGCTGGCTAAGAAGATCACAACCACCTTCAAGCTGTCTTCTGAGCAGCTCAGCTCCCAG
Seq A exon
GTGTGGTCCTGCCCTGATGGGTTTCCAGGGTCTGAAAACTTCTGCCTGCTCCCAGCCTCCAGGGCACCTGCTGAGGGCCAGGCTCTATGCCCGGTGCTTTACAGGCATTACCTTGTCGGCTTCTCCCAGCAACCCTTGGAGATAGGAGTTACATGCCCATTTGTCAGCTGAGGACACCGAGGTCCTAGGTAGCTAAAGGTCTGGCCAGGCTCATGCAGTACACAGCAGCGCTGGAGCAGGAGCCAGGAACAGATGCCTGTGTGGCTACTTCAGGTGCAAGGGCCTTGATCATTAGGGCACCAAGAGCTTCAGAACCCCAGGCTGGGGAGCAAGTGCACCTGGGCCTTGTGGGGACCAGAGTAGGACAGCCAGGCCCTCCGAGCCTCCCAGCACCACCATCCTTCCACTCAGCTTGCTGAGCCCAGATTCCAAGGACAGATGGGGTGGCCCAGGCACCAGTGCTGGTGGATGAGCTTTCCTGTTCAGCTTGGTTCCCAAACAGGCCCCCACTTTGCAGCAGCAGAGACGAGTCCCACCTCTGGGCTGACATGCTAGCAACTTAGTTTGTCTTCCATCATGATTTCAGAAAAAAATCCCTGTTGTCACCCTAATGGGCCTTCTCTGGGTCACCTGCTCATCCATGAACACCAATCACTGTGGCCAGGGGTAATCAGTACTACCTTTGGCCAGATGCAGTCCACCAAAATCTATGAGCTAGAAGAGATGCAGCCTGTTACCAGGAAAAGCAGTGGCAGTTCATCACAGTGCACTCCTGGGTGCCGGCGCTCCCACACACCCTTCTTTCCAAAATGCTCCCCACCCCCAATCAGAGCAACTATCCCACATGGTTTTGGAAATGCACTCAACTCTTCCCAAATAGAAATGACCCAAAGTCAAGCCCAGCCTCTTCATGCAGCTCCAAGTCCGAGATTTCTGGAACATATGCTAGTCTATGGGTTGGGTCTAGATGGAGTCCTCTTGGTTGGGCACCATGGGGCAGAATGATTAATTTAACTATTTCCAACTCACTTACTGTGTAATGAAGAGAAACAGGCTGGGGGAAAAAGCATGGTGGTGTGGCCAGAAAGACGGGTCTGGAGAGATGTTATGGGAGAATGTTAGAAGGAAGCTCAAGGGCCATCAAGGCCAAGCTGATTGTTGCACAGATGGGAAACTCCTTCATTCACTTTTCCAGCACAACTAGAGGGCCCTCCTGCCCCTGGCCATGTGCTGGGACAGTGACCAAAGGATGCAGAATGGGTATCGGATAAAGGAGGGGGCTATCGGGACAGTAAAGTGCAGGGTGCCCGGGGAGCCCAAAGAAGGTGCACCTGCCCAGGCTGGGCATGTAGGTGGTCCCAGCAGGTCTGCAAGGGAAGTGCTATGAGCTGGTGATGAGACTTGGCCAACTGCCAGGTGGGAGGCAGAGTGTTCCAGGCAGAAGCCTTGGAGAGGGACAGTGCTCACCCATGCCTCCTTCTGTATGGCGACAG
Seq C2 exon
GATCACTATGACTTCGGGATGAGAGCCGTGAAAACTGTGATCTCGGCTGCTGGGAACCTCAAGCGAGAAAACCCCAGCATGAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000114841-DNAH1:NM_015512:32
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(21.2=100)
A:
NA
C2:
PF127742=AAA_6=PD(10.4=82.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTTCCGACCCGTGGCC
R:
TTCATGCTGGGGTTTTCTCGC
Band lengths:
230-1723
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)