GgaINT0019506 @ galGal3
Intron Retention
Gene
ENSGALG00000004297 | DNAH1
Description
NA
Coordinates
chr12:2920878-2921040:+
Coord C1 exon
chr12:2920878-2920879
Coord A exon
chr12:2920880-2920920
Coord C2 exon
chr12:2920921-2921040
Length
41 bp
Sequences
Splice sites
5' ss Seq
GATGTTCCC
5' ss Score
-17.57
3' ss Seq
GACTTTTTTCCCCCTATTAGATT
3' ss Score
8.5
Exon sequences
Seq C1 exon
AT
Seq A exon
GTTCCCAGTGGCTGATAAGCAGACTTTTTTCCCCCTATTAG
Seq C2 exon
ATTGCTGGTTTACCAAACGACACGCTGTCTGTGGAGAACGGGGTGATAACACGGTTCTCCCAGCGCTGGACTCACTGCATAGACCCTCAAAGACAAGCAAACAAGTGGATCAAGAACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004297:ENSGALT00000006843:60
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127812=AAA_9=FE(0.1=100)
A:
NA
C2:
PF127812=AAA_9=FE(16.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]