MmuINT0050548 @ mm9
Intron Retention
Gene
ENSMUSG00000019027 | Dnahc1
Description
dynein, axonemal, heavy chain 1 [Source:MGI Symbol;Acc:MGI:107721]
Coordinates
chr14:32081172-32082096:-
Coord C1 exon
chr14:32081971-32082096
Coord A exon
chr14:32081292-32081970
Coord C2 exon
chr14:32081172-32081291
Length
679 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACT
5' ss Score
8.63
3' ss Seq
GTGAGCATGGCTTCCCACAGATT
3' ss Score
5.27
Exon sequences
Seq C1 exon
GGCCAGTACCGTACAACACTCTATGAGTACTGGGTCAACCAGCTCACAGTTCACCATGTCCCGCATACCTCCAAGCCCACACTGATTACAACACTGGGAAACCCCGTGAAGATCCGCTCTTGGCAG
Seq A exon
GTAACTGACAGATGTCAGAATGTGCTTCAGACTGGGCCTAGGGCCTCCTGCCTGCTTCCTACCCTCGTTTCCATGGCTACCTCCTCTGGATCCTCCTCCTGCCTGCTTTCTACCCTCGTTTCCATGGATACCTCCTCTGGATCCTCTTGCCTGCTTCCTACCCTCGTTTCCATGGCTACCTCCTCTGGATCCTCCTCCTGCCTGCTTTCTACCCTCCTTTCTTTCCATGGATACCTCCTTTGGATTCCCCTGGGTATAGCAAGAGGGTGGTGAGTAGATAAAGAAGCAAGAACTAGGCCAGGTATGGCATAGATGTAGCTGTAGGGAGAGGTTTCAAGTCAGGTCTAAGCAAGGCCCCAAAGGCAAAGAGAGAGGCCACAAGTGGGCAAATATAAAGAGCCAATGGGATTTGGGCACCCTGAAGGTGATATCACTAAGCAAGGATACAGAAGCCACGTGGACGAAAAGGCCCAGCAAAGGAGAGCATTAGGAGACCCTCCAACAGCAGAAGAGAATCCTGGAGACACATCCTTGTCCACACTGCCATCTCTATCCCTCATACTGCCCCCATCCAAAGCATACAACAAGGAGAAATCTACAGCCAAACCGAGTTAGGAGGAGCTAATGTCCAGCCAGCTGTGCTCATACAAGAACCCTGAGTGAGCATGGCTTCCCACAG
Seq C2 exon
ATTGCTGGCCTCCCCAATGACACTCTGTCAGTGGAGAACGGGGTCATCAATCAGTTCTCGCAGCGCTGGACCCACTTCATTGACCCCCAGGGTCAGGCTAACAAATGGATCAAGAACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000019027-Dnahc1:NM_001033668:60
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=PD(4.0=33.3),PF127812=AAA_9=PU(4.8=26.2)
A:
NA
C2:
PF127812=AAA_9=FE(16.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCAGTACCGTACAACACTC
R:
CATGTTCTTGATCCATTTGTTAGCCT
Band lengths:
246-925
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: