DreINT0058010 @ danRer10
Intron Retention
Gene
ENSDARG00000100115 | dnah1
Description
dynein, axonemal, heavy chain 1 [Source:ZFIN;Acc:ZDB-GENE-081015-3]
Coordinates
chr11:34394109-34394489:-
Coord C1 exon
chr11:34394364-34394489
Coord A exon
chr11:34394229-34394363
Coord C2 exon
chr11:34394109-34394228
Length
135 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGA
5' ss Score
7.41
3' ss Seq
GTTTGTGTGGTTTTGTGTAGATT
3' ss Score
7.44
Exon sequences
Seq C1 exon
GGCGAGTATCGTTCAGCAATGGCTGAAGAGTGGCTCAGGGGTTTTAAAGATCTGGCGGTTCCTCACACAGAACAGCCCAACCTGATCAGTACCCTGGGAGACAAAGTCAAAATCCGCTCCTGGCAG
Seq A exon
GTCAGAAGCAAACAACATTATGTGCAGGGATACTGTATAAAGTCTGTGTAAAACTAGAAGGTTGAATATTGTTTATTTGAGTATGCTAATTATTAGGGATTATCTAATCATTTGTGTTTGTGTGGTTTTGTGTAG
Seq C2 exon
ATTGCAGGCCTGCCGAAGGATAGTCTCTCTGTGGAGAATGGAGTAATTGCACAATACTCTCAGCGCTGGCCTCTGTTTATCGATCCGCAGGGACAGGCCAACAAGTGGATCAAGAACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100115:ENSDART00000161471:53
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=PD(4.3=34.9),PF127812=AAA_9=PU(4.8=25.6)
A:
NA
C2:
PF127812=AAA_9=FE(17.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCGAGTATCGTTCAGCAATG
R:
TTCTTGATCCACTTGTTGGCCT
Band lengths:
242-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]