GgaINT0019505 @ galGal3
Intron Retention
Gene
ENSGALG00000004297 | DNAH1
Description
NA
Coordinates
chr12:2920173-2920879:+
Coord C1 exon
chr12:2920173-2920302
Coord A exon
chr12:2920303-2920877
Coord C2 exon
chr12:2920878-2920879
Length
575 bp
Sequences
Splice sites
5' ss Seq
CAAGTTATG
5' ss Score
-7.99
3' ss Seq
CAGCTGTGCTGCGTTTCCAGATG
3' ss Score
7.47
Exon sequences
Seq C1 exon
GGACAGTACCGCGTGGCGCTGTGCAAGGAGTGGCTGGGAAAGCTCTCAGAAAACAACATTCCTCACACCGAGGAGCCAAACCTGATCAGCACTCTTGGGGATCCCGTGGAAATCCGCTCCTGGCAGGCAA
Seq A exon
GTTATGGAAAAGATGATCCAGGAAGCTGAAAAGGCAGGAGACATCTTGCTTCAGGTAGAGGCTAAGACACTCAGTGCACAATTCATTAGGAGCTACTTTCCCAAAGGAGAGACCCCAAACAAAAGAGCAGAAGGGGACCTGGAAGCACCCAGGGCAGCAGCAGCTCTGAGTGCACCATACAGCTCAACCTGTTGGGTTTCCACTTTACACAGCACAATGTTACAGCAAAGCCTTGGCCACAGCCTGCCCACCCCCTAACTCAACCAGCACAGCTCTGTCCTACAGCTCAGCTGCTCCAAAGAGAACTGCATCTCTTTGGAACCCTCACCACCATCCCCTGCGCAGCCATAACCTCCACAACATGACCACGCAGGGGCCAGGATAGCAAGGGCACCTCAGGATAAACCTTATTACATACTGTAGCTACCATCCTGCATGACTAAACAGAGCCAAAAGGCACTCCCTTGAATCCGGGCCCCAGAATTGATCCAGCACACACAGCAGGCAAACACATTAAAGAGAGAACAGACAAGCCATATCCTGCAACAAGGAGATCAGCTGTGCTGCGTTTCCAG
Seq C2 exon
AT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004297:ENSGALT00000006843:59
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.069 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=PD(18.7=31.8),PF127812=AAA_9=PU(5.6=29.5)
A:
NA
C2:
PF127812=AAA_9=FE(0.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]