BtaINT0050134 @ bosTau6
Intron Retention
Gene
ENSBTAG00000047794 | DNAH1
Description
dynein, axonemal, heavy chain 1 [Source:HGNC Symbol;Acc:HGNC:2940]
Coordinates
chr22:49050729-49051584:-
Coord C1 exon
chr22:49051459-49051584
Coord A exon
chr22:49050849-49051458
Coord C2 exon
chr22:49050729-49050848
Length
610 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCCC
5' ss Score
5.77
3' ss Seq
CCCAGCCTGGTCCCTCACAGATC
3' ss Score
7.55
Exon sequences
Seq C1 exon
GGCCAGTACCGCACAGTGCTGTATGACAGCTGGGTCAAGCAGCTCGTGGCCCACCGCGTCCCACACACCGCCGAGCCCACGCTGATCGGGACACTGGGGAACCCCGTGAAGATCCGCTCCTGGCAG
Seq A exon
GTGCCCACCCTGTGGGGCTCGAGCAACCGGGCTGGGCCTGCAGTGTGCTCTGGGCTGGGCCAGGAGGCCCCCGCCTGCCTCCCGTCCTCTCTCCTGGGTCTGCTTAGAGGTGCCTTCCCTGAACCTGCCTGGGGCCGGTCAGAGGCTGGTGGGCAGGAGAGGAGAAAGCTGAGTGGCACAGGTGCTGGCTGACTGCAGGCAGAGAGGTCAAAGGGTGCTTGTGAGAGTTGGGCGGGGTAGGAGAGCAGTGTCCAGAGCGCGGGGAGGACAGGTAGAGTTGACACAGGGAGAGAACCAAGAGGCAGTAGGCACAGGCCAGGTGTGGACACAGGCTGGGAGGGCCAGTGGGCTCCAATGGCTCCGTGAAGATGGTCTGACTGAGCTAGGACTCAACAGGCAAAGAAACAAGAGGCCCGGCGAAGGAGGGTGTCAGGAGTCAGCCCATAGCCGGGAGGCAGGTCCTGAGGGCTGAGACCTCGTGTACTGCCCTCCACCCTCAAGAGGATGCAGTAAGGGGAAGGGGTCAGCTGGAGCATGAGGCTGGGGGTAGCTGCTACCCCACCGGGCCTGTTTGTGTGAGCCTCCCCCCACCCAGCCTGGTCCCTCACAG
Seq C2 exon
ATCGCTGGCCTCCCCAACGACACCCTGTCAGTGGAGAATGGGGTCATCAACCAGTTCTCCCAGCGCTGGACCCACTTCATTGACCCTCAGGGCCAGGCCAACAAATGGATCAAGAACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047794:ENSBTAT00000066095:58
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=PD(21.5=33.3),PF127812=AAA_9=PU(4.3=23.8)
A:
NA
C2:
PF127812=AAA_9=FE(17.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCAGTACCGCACAGTG
R:
CATGTTCTTGATCCATTTGTTGGCC
Band lengths:
246-856
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]