RnoINT0048616 @ rn6
Intron Retention
Gene
ENSRNOG00000026914 | Dnah1
Description
dynein, axonemal, heavy chain 1 [Source:RGD Symbol;Acc:621795]
Coordinates
chr16:7353562-7354428:-
Coord C1 exon
chr16:7354303-7354428
Coord A exon
chr16:7353682-7354302
Coord C2 exon
chr16:7353562-7353681
Length
621 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACT
5' ss Score
8.63
3' ss Seq
TGGCGCCTGGTTTCCCACAGATT
3' ss Score
9.94
Exon sequences
Seq C1 exon
GGGCAGTACCGTGCAGCGCTCTATGAGTACTGGGTCAACCAGCTCACAGTTTACGGTGTCCCACACACCTCCAAGCCCACGCTGATTTCAACCCTGGGAAACCCCGTGAAGATCCGCTCTTGGCAG
Seq A exon
GTAACTATCAGAGTGCACTTCAGGCTGGGCCTAGAGCCCCCTGCCTCCTTTCCACCCTCCTTTCCAGTGGATGCCTCCTCTGGATCCTCCTGGTTGCAGCAAGAGGGTGGTGAGAAGAAAAAGAAGCAGGCCAGGTGGGGTTGGGGATTTAGCTCAGTGGCAGAGCGCTTGCCTAGCAAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCTAAAAATAAAAAAAAAAAAAAAAAGAAGCAGGCCAGGGGTGGCACAGATGCATCTGTGGGGAGAGGTTTCAAGTCAGGGCTAAGCAAGGCCCAAAGGCCGGGAGAGGCCGATGGTGGGCAAGTATAAAAGGCCAGTGGGACTTGGATACCCTGAAGGTAATGTCACTAAGCAAGGATGCAGAAACCACAGGGACAAAGAGGCCCACAGAGGACAGCACCGGGAGAGCATCCGGCAGCAGAAGAGAATCCAGGAGACACGTCCTATCCACCCTGCCATCTCTACCCCTCATGCTCCTCCATCCAAAGCATTCAAGGAGAAACCTACAGCCCTACAGTTAGTGGGTAGCTAATGTCCCAGCCAGCTGTGCTCACACAAGAATCGTGACCGAGCATGGCGCCTGGTTTCCCACAG
Seq C2 exon
ATTGCTGGCCTCCCCAATGACACTCTGTCAGTGGAGAATGGGGTCATCAATCAATTCTCCCAGCGCTGGACCCACTTCATTGACCCTCAGGGTCAGGCTAACAAATGGATCAAGAACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026914:ENSRNOT00000035009:61
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=PD(3.8=33.3),PF127812=AAA_9=PU(4.3=23.8)
A:
NA
C2:
PF127812=AAA_9=FE(17.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTACCGTGCAGCGCTCTAT
R:
TCTTGATCCATTTGTTAGCCTGACC
Band lengths:
238-859
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]