GgaINT1011467 @ galGal4
Intron Retention
Gene
ENSGALG00000004297 | DNAH1
Description
dynein, axonemal, heavy chain 1 [Source:HGNC Symbol;Acc:HGNC:2940]
Coordinates
chr12:3092641-3093508:+
Coord C1 exon
chr12:3092641-3092766
Coord A exon
chr12:3092767-3093388
Coord C2 exon
chr12:3093389-3093508
Length
622 bp
Sequences
Splice sites
5' ss Seq
CAGGCAAGT
5' ss Score
3.1
3' ss Seq
GACTTTTTTCCCCCTATTAGATT
3' ss Score
8.5
Exon sequences
Seq C1 exon
GGACAGTACCGCGTGGCGCTGTGCAAGGAGTGGCTGGGAAAGCTCTCAGAAAACAACATTCCTCACACCGAGGAGCCAAACCTGATCAGCACTCTTGGGGATCCCGTGGAAATCCGCTCCTGGCAG
Seq A exon
GCAAGTTATGGAAAAGATGATCCAGGAAGCTGAAAAGGCAGGAGACATCTTGCTTCAGGTAGAGGCTAAGACACTCAGTGCACAATTCATTAGGAGCTACTTTCCCAAAGGAGAGACCCCAAACAAAAGAGCAGAAGGGGACCTGGAAGCACCCAGGGCAGCAGCAGCTCTGAGTGCACCATACAGCTCAACCTGTTGGGTTTCCACTTTACACAGCACAATGTTACAGCAAAGCCTTGGCCACAGCCTGCCCACCCCCTAACTCAACCAGCACAGCTCTGTCCTACAGCTCAGCTGCTCCAAAGAGAACTGCATCTCTTTGGAACCCTCACCACCATCCCCTGCGCAGCCATAACCTCCACAACATGACCACGCAGGGGCCAGGATAGCAAGGGCACCTCAGGATAAACCTTATTACATACTGTAGCTACCATCCTGCATGACTAAACAGAGCCAAAAGGCACTCCCTTGAATCCGGGCCCCAGAATTGATCCAGCACACACAGCAGGCAAACACATTAAAGAGAGAACAGACAAGCCATATCCTGCAACAAGGAGATCAGCTGTGCTGCGTTTCCAGATGTTCCCAGTGGCTGATAAGCAGACTTTTTTCCCCCTATTAG
Seq C2 exon
ATTGCTGGTTTACCAAACGACACGCTGTCTGTGGAGAACGGGGTGATAACACGGTTCTCCCAGCGCTGGACTCACTGCATAGACCCTCAAAGACAAGCAAACAAGTGGATCAAGAACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004297:ENSGALT00000006843:60
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.071 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=PD(4.0=33.3),PF127812=AAA_9=PU(4.8=26.2)
A:
NA
C2:
PF127812=AAA_9=FE(16.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGCTGTGCAAGGAGTGG
R:
AGGTTCTTGATCCACTTGTTTGCT
Band lengths:
230-852
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]